BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0513900 Os05g0513900|AK100825
         (248 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G14260.1  | chr2:6041441-6043869 REVERSE LENGTH=381            416   e-117

>AT2G14260.1 | chr2:6041441-6043869 REVERSE LENGTH=381
          Length = 380

 Score =  416 bits (1070), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 197/247 (79%), Positives = 218/247 (88%), Gaps = 1/247 (0%)

Query: 1   AGRSTPHACLEENTTWDLVADIEKLREHLGIPEWQVFGGSWGSTLALAYSESHPDKVTGI 60
           AG+STPHACLEENTTWDLV DIEKLREHL IPEW VFGGSWGSTLALAYS+SHPDKVTG+
Sbjct: 133 AGKSTPHACLEENTTWDLVNDIEKLREHLKIPEWLVFGGSWGSTLALAYSQSHPDKVTGL 192

Query: 61  VLRGIFLLRKKELDWFYEGGAAAIFPDAWEPFRDFIPEDER-NCFIAAYSKRLTSSDADV 119
           VLRGIFLLRKKE+DWFYEGGAAAI+PDAWE FRD IPE+ER +  + AY KRL S D ++
Sbjct: 193 VLRGIFLLRKKEIDWFYEGGAAAIYPDAWEEFRDLIPENERGSSLVDAYHKRLNSDDLEI 252

Query: 120 QAEAAKRWTMWEMMTAHLIQNHENIKRGEDDKFSLAFARIENHYFVNKGFLPSDSHLLDN 179
           Q  AA+ WT WEMMTA+L  N EN+++ EDDKFSLAFARIENHYFVNKGF PSDSHLLDN
Sbjct: 253 QYAAARAWTKWEMMTAYLRPNLENVQKAEDDKFSLAFARIENHYFVNKGFFPSDSHLLDN 312

Query: 180 VDKIRHIKAFIVQGRYDVCCPMMSAWDLHKAWPEAEFKMVPDAGHSANEVGVAAELVSAN 239
           VDKIRHIK  IVQGRYDVCCPMMSAWDLHKAWPEAE K+V DAGHSANE G++AELV AN
Sbjct: 313 VDKIRHIKTTIVQGRYDVCCPMMSAWDLHKAWPEAELKIVYDAGHSANEPGISAELVVAN 372

Query: 240 EKLKSMF 246
           EK+K++ 
Sbjct: 373 EKMKALM 379



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,745,314
Number of extensions: 241158
Number of successful extensions: 489
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)