BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0510700 Os05g0510700|AK070308
         (296 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65910.1  | chr5:26361592-26363341 REVERSE LENGTH=433          128   3e-30
AT3G49800.1  | chr3:18471957-18473676 REVERSE LENGTH=429          113   1e-25
AT1G10720.1  | chr1:3562964-3564446 FORWARD LENGTH=430            110   1e-24
AT2G10950.1  | chr2:4315534-4317800 REVERSE LENGTH=337             92   3e-19

>AT5G65910.1 | chr5:26361592-26363341 REVERSE LENGTH=433
          Length = 432

 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/223 (43%), Positives = 126/223 (56%), Gaps = 16/223 (7%)

Query: 2   LQSNKAVAEISKIASSLLPFGQGDAD-XXXXXXXXXXXXXXXXRHISTRPETWLDFPLFI 60
           L  N  V+E +KIAS+ L     D D                 + ++  PETWLDFPL  
Sbjct: 111 LSGNLPVSEFTKIASNFLQLSSEDVDPKDYDVIGVTEELVAFVKDLAMHPETWLDFPLPD 170

Query: 61  SERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACFWKIYFVLLHSKLNKQ 120
            +   DDFEL+DAQY HAL++E L PSL+ ++  +C   M+E CFW+IYFVL+H KL+K 
Sbjct: 171 DDDSFDDFELADAQYEHALAVERLAPSLASLRIELCPEYMTENCFWRIYFVLVHPKLSKD 230

Query: 121 DAELLSTPQILQAREELLQSLQTKNKRGSEVPEEEESSKTVIMSSAPAEEKVIQPSSIEN 180
            A LLSTPQ+L+AR  L Q LQ ++K   E    E  + TVI+      E +  P S E 
Sbjct: 231 HALLLSTPQVLEARSMLSQELQKRSKLPVEAGSSE--ANTVIV------EPLTVPPSPET 282

Query: 181 KAGKPEVSSFEEPSSDISPDVEAEKFPIAITEMEIVDKSVIEE 223
            A K  V+  E      S DVE +K PI   E++IVDKSVIEE
Sbjct: 283 AAVKI-VNPVE------SSDVETDKHPIESKEIQIVDKSVIEE 318



>AT3G49800.1 | chr3:18471957-18473676 REVERSE LENGTH=429
          Length = 428

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 16/232 (6%)

Query: 2   LQSNKAVAEISKIASSLLPFGQGDADXXXXXXXXXXXXXXX------XRHISTRPETWLD 55
           L  N  V++ + +AS+ L  G    D                      R ++  PETWLD
Sbjct: 126 LSGNLPVSKFTNMASNFLQLGSEGVDSKNRDVAIGNAIGVTEEVVLFARDLALHPETWLD 185

Query: 56  FPLFISERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACFWKIYFVLLHS 115
           FP    +   DDFE++DAQY HAL++E+L  SL+ ++  +C   MSE CFW+IYFVL+H 
Sbjct: 186 FPFPDEDDNFDDFEMTDAQYEHALAVENLASSLAALRIELCPAYMSEYCFWRIYFVLVHP 245

Query: 116 KLNKQDAELLSTPQILQAREELLQS-LQTKNKRGSEVPEEEESSKTVIMSSAPAEEKVIQ 174
             +K DA  LSTPQ+L++R  L    L+ +NK    VPE  +       + +   E + Q
Sbjct: 246 IFSKHDALTLSTPQVLESRALLSHELLRKRNKDTVVVPESSDRG-----ADSENVEPLFQ 300

Query: 175 PSSIENKAGKPE---VSSFEEPSSDISPDVEAEKFPIAITEMEIVDKSVIEE 223
           P++   K+ +PE     + E   S    + E EK  +   E+++VDK VIEE
Sbjct: 301 PTNPSPKS-EPEPVKTITVETIHSAERSEFETEKHTVETKEVQVVDKPVIEE 351



>AT1G10720.1 | chr1:3562964-3564446 FORWARD LENGTH=430
          Length = 429

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 109/199 (54%), Gaps = 25/199 (12%)

Query: 44  RHISTRPETWLDFPLFISERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEA 103
           R+I+  PETWLDFPL   E   D  E+SDAQ  HAL++E L P L+ ++  +C   MS  
Sbjct: 184 RNIAMHPETWLDFPLDPDEDLDDL-EMSDAQRGHALAIERLAPRLAALRIELCPCHMSVG 242

Query: 104 CFWKIYFVLLHSKLNKQDAELLSTPQILQAREELLQSLQTKNKRGSEVPEEEESSKTVIM 163
            FWK+YFVLL S+LNK DA LLS+PQ+++AR   ++ LQ +     E       S+ +I+
Sbjct: 243 YFWKVYFVLLLSRLNKHDAHLLSSPQVMEARALWMKELQNQTHSSKE-------SRDMIL 295

Query: 164 SSAPAEEKVIQPSS--IENKAG----KPEVSSFEEPSSDISPDVEAEKFPIAITEMEIVD 217
                EE+ I PS+    N A      P + +FE PS      +    F       + +D
Sbjct: 296 -----EEEDITPSTSNYYNHAPPEFLSPRIYAFEPPS------IMYRDFEHGFENAQFID 344

Query: 218 KSVIEEELSVKNETKSLAI 236
           K+VIEE+   KN+  S ++
Sbjct: 345 KAVIEEKPIQKNDKNSASL 363



>AT2G10950.1 | chr2:4315534-4317800 REVERSE LENGTH=337
          Length = 336

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 11/121 (9%)

Query: 46  ISTRPETWLDFPLFISERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMSEACF 105
           IST+P  W DFPL +      +FELS+AQ  HA ++E LVP L  +K  + S  M +  F
Sbjct: 122 ISTKPGCWTDFPLSLDT----EFELSEAQRAHASAIEDLVPGLVAVKNQVSSY-MDDEHF 176

Query: 106 WKIYFVLLHSKLNKQDAELLSTPQILQAREELLQSLQ------TKNKRGSEVPEEEESSK 159
           W IYF+LL  +LN  D ELL+T ++ + R++LL  LQ      +K+  G E PEE  S +
Sbjct: 177 WLIYFILLMPRLNGHDFELLATCKVFETRDQLLLKLQKKETGSSKSTTGHETPEEGSSRE 236

Query: 160 T 160
           T
Sbjct: 237 T 237



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.126    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,037,189
Number of extensions: 189887
Number of successful extensions: 800
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 4
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 111 (47.4 bits)