BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0510200 Os05g0510200|AK064302
(361 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G44160.1 | chr3:15889225-15891814 REVERSE LENGTH=363 465 e-131
AT3G48620.1 | chr3:18016175-18017750 FORWARD LENGTH=322 232 2e-61
AT5G19620.1 | chr5:6623323-6627641 FORWARD LENGTH=733 196 2e-50
AT3G46740.1 | chr3:17216104-17219296 REVERSE LENGTH=819 74 2e-13
AT4G09080.1 | chr4:5804451-5806093 FORWARD LENGTH=397 61 8e-10
>AT3G44160.1 | chr3:15889225-15891814 REVERSE LENGTH=363
Length = 362
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 278/356 (78%)
Query: 1 MGAQQSVNAGKAKVDVHVDLTHMLCEALLLPPMRNSGATFSQIVGRISLKHPSLFGRSEK 60
MGAQ+S++AG+AK+DV+VD TH LC +L+ P R++ + S ++G + +KHP+LFG SEK
Sbjct: 1 MGAQKSIHAGRAKIDVNVDFTHKLCTSLMFPAFRDTSSPLSLVIGSLCIKHPNLFGGSEK 60
Query: 61 LDVILDKGINESNAVIAFRRPRPEWLSQQSFVIQHTMTPEIAVHGFPADNFTRSGSRGIN 120
LDV DKG+ +SN ++AFRRPRPEW QQ F IQH+++PEI VHG P DNF+RSGS G+N
Sbjct: 61 LDVSWDKGLYDSNVLVAFRRPRPEWRPQQCFFIQHSLSPEIGVHGTPVDNFSRSGSGGVN 120
Query: 121 LSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVNNEGRSIARDHDGFPLTCSGNLHDNMII 180
LS+L+LG++L+EP++S W+S TS+KFEH+RP+N++GR+I RD DGFP+TCSGN HD+M++
Sbjct: 121 LSKLALGLDLSEPASSKWSSTTSIKFEHVRPINDDGRAITRDLDGFPITCSGNTHDSMVV 180
Query: 181 LKQESGYADVNDNSFLKVNLQMEQGLPLVPKSLTFNRVKCAVSKGMKLGPTFLVTSLTGG 240
LKQES +A D ++Q+EQG+P+V K L FNR K SKG++ GP FL+ SLTGG
Sbjct: 181 LKQESRFAKATDQGLSHFSMQIEQGIPVVSKWLIFNRFKFVASKGVRFGPAFLLASLTGG 240
Query: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGAGRLCLIANCEYTVPLAKHLEGSIFMDCGSD 300
SIVGDMAPYQAFAIGGLGSVRGYGEGAVG+GR CL+AN E +PL K EG+IF+DCG+D
Sbjct: 241 SIVGDMAPYQAFAIGGLGSVRGYGEGAVGSGRSCLVANTELALPLNKMTEGTIFLDCGTD 300
Query: 301 LGSACHVPGNPALRQXXXXXXXXXXXXXXXNTDLGQIRVDYAMNAFSRKTIYFGIN 356
LGS+ VPGNP++RQ + LG ++VDYA+NAF++KT+YFG+
Sbjct: 301 LGSSRLVPGNPSMRQGKPGFGYGFGYGLRFKSPLGHLQVDYAINAFNQKTLYFGVT 356
>AT3G48620.1 | chr3:18016175-18017750 FORWARD LENGTH=322
Length = 321
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/292 (44%), Positives = 169/292 (57%), Gaps = 48/292 (16%)
Query: 110 NFTRSGSRGINLSRLSLGVELNEPSTSNWTSGTSVKFE------------HIRPVNNEGR 157
N S S G+NLS+L++G++L+EP++S W+S TSVKFE +R +GR
Sbjct: 27 NSASSYSGGVNLSKLAVGLDLSEPASSKWSSTTSVKFEVPGHYLLQTLYMCVRLTMTDGR 86
Query: 158 SIARDHDGF----PLTCSGNLHDNMIILKQESGYADVNDNSFLKVNLQMEQGLPLVPKSL 213
+ L CSGN HD+M++LKQES +A D ++Q+EQG+P+V L
Sbjct: 87 YQRSGRISYNMQNSLLCSGNTHDSMVVLKQESRFAKATDQGLSHFSMQIEQGIPVVSNWL 146
Query: 214 TFNRVKCAVSKGMKLGPTFLVTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGAGRL 273
FNR K SKG++ GP F + SLTGGSIVGDM PYQAFAIGGLGSVRGYGE AVG+GR
Sbjct: 147 IFNRFKFVASKGVRFGPAFPLASLTGGSIVGDMTPYQAFAIGGLGSVRGYGEVAVGSGRS 206
Query: 274 CLIANCEYTVPLAKHLEGSIFMDCGSDLGSACHVP------------------------- 308
CL+AN E K EG+IF+DCG+DLGS+ VP
Sbjct: 207 CLVANTELA---NKMTEGTIFLDCGTDLGSSRLVPVSSLYLLRTRTIKKLLRHENDKAVA 263
Query: 309 ----GNPALRQXXXXXXXXXXXXXXXNTDLGQIRVDYAMNAFSRKTIYFGIN 356
GNP+LRQ + LG ++VDYAMNAF++KT+YFGI
Sbjct: 264 ELVSGNPSLRQGKPGFGYGFGYGLRFKSPLGHLQVDYAMNAFNQKTLYFGIT 315
>AT5G19620.1 | chr5:6623323-6627641 FORWARD LENGTH=733
Length = 732
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 172/322 (53%), Gaps = 15/322 (4%)
Query: 40 FSQIVGRISLKHPSLFGRSEKLDVILDKGINESNAVIAFRRPRPEWL------SQQSFVI 93
S ++G + H +LFGR++KL+V L++G +S I + P W+ + +S ++
Sbjct: 416 LSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDP---WIEGDDKRTSRSIMV 472
Query: 94 QHTMTPEIAVHGFPADNFTRSGSRGINLSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVN 153
Q++ TP VHG DN + + + R++ GVE + P W + F+H +
Sbjct: 473 QNSRTPGNLVHGNQPDNSS------LTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARD 526
Query: 154 NEGRSIARDHDGFPLTCSGNLHDNMIILKQESGYADVNDNSFLKVNLQMEQGLPLVPKSL 213
+G I +D PLT SG HD ++ K ES Y D MEQGLP++P+ L
Sbjct: 527 EQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWL 586
Query: 214 TFNRVKCAVSKGMKLGPTFLVTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAVGAGRL 273
FNRV KG+ +GP + SL+GG +VG +P++AF IGG SVRGY EGAVG+GR
Sbjct: 587 CFNRVTGRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRS 646
Query: 274 CLIANCEYTVPLAKHLEGSIFMDCGSDLGSACHVPGNPALRQXXXXXXXXXXXXXXXNTD 333
++ + E + P+ +EG IF D G+D+GS VPG+PA + ++
Sbjct: 647 YVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVRVDSP 706
Query: 334 LGQIRVDYAMNAFSRKTIYFGI 355
LG +R++YA N +FG+
Sbjct: 707 LGPLRLEYAFNDQHAGRFHFGV 728
>AT3G46740.1 | chr3:17216104-17219296 REVERSE LENGTH=819
Length = 818
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 110/256 (42%), Gaps = 42/256 (16%)
Query: 108 ADNFTRSGSRGINLSRLSLGVELNEPSTSNWTSGTSVKFEHIRPVNNEGRSIARDHDGFP 167
+NFTR S+ + G+ + E +T + +S + + + P S DG P
Sbjct: 570 TENFTRQ-------SKFTYGLVMEEITTRDESSHIAANGQRLLP------SGGISADGPP 616
Query: 168 LTCSGNLHDNMIILKQESGYADVNDNSFLKVN---------LQMEQGLPLVPKSLTFNRV 218
T SG D M L+ A++ ++ VN Q++QGL + K FNR
Sbjct: 617 TTLSGTGVDRMAFLQ-----ANITRDNTKFVNGAVVGQRTVFQVDQGLGIGSKFPFFNRH 671
Query: 219 KCAVSKGMKLG----------PTFLVTSLTGGSIVGDMAPYQAFAIGGLGSVRGYGEGAV 268
+ ++K ++L P LV G VGD+ Y AF +GG SVRGY G +
Sbjct: 672 QLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNMGEL 731
Query: 269 GAGRLCLIANCEYTVPLAKHLEGSIFMDCGSDLGSACHVPGNPALRQXXXXXXXXXXXXX 328
GA R E +P+ K+ F++ G+DLGS+ V GNP
Sbjct: 732 GAARNIAEVGAEIRIPV-KNTHVYAFVEHGNDLGSSKDVKGNPT----AVYRRTGQGSSY 786
Query: 329 XXNTDLGQIRVDYAMN 344
LG +R +YA++
Sbjct: 787 GAGVKLGLVRAEYAVD 802
>AT4G09080.1 | chr4:5804451-5806093 FORWARD LENGTH=397
Length = 396
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 25/168 (14%)
Query: 164 DGFPLTCSGNLHDNMIILKQESGYADVNDNSFLKVN---------LQMEQGLPLVPKSLT 214
+G P T SG D++ L+ A++ ++ VN Q++QGL +
Sbjct: 191 NGPPTTLSGTGIDHIATLQ-----ANITRDNTKLVNGAVVGEKNIFQVDQGLGIGNNFPL 245
Query: 215 FNRVKCAVSKGMKLG----------PTFLVTSLTGGSIVGDMAPYQAFAIGGLGSVRGYG 264
FNR + +++ ++L P LV G +GD+ Y FA+GG SVRGY
Sbjct: 246 FNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDLPSYDVFALGGPNSVRGYS 305
Query: 265 EGAVGAGRLCLIANCEYTVPLAKHLEGSIFMDCGSDLGSACHVPGNPA 312
G +GA + L E +P+ K+ F + G+DLGS+ V GNP
Sbjct: 306 MGELGAAKNILELGAEIRIPV-KNTHVYAFAEHGNDLGSSKDVKGNPT 352
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,763,325
Number of extensions: 325740
Number of successful extensions: 683
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,364,969
Effective search space: 2183256909
Effective search space used: 2183256909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)