BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0499500 Os05g0499500|016-025-C09
         (185 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05270.1  | chr1:1531806-1534305 REVERSE LENGTH=372             68   2e-12

>AT1G05270.1 | chr1:1531806-1534305 REVERSE LENGTH=372
          Length = 371

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 43/104 (41%)

Query: 107 LAKGVVCLECETSPEAEAAGAGGTCRVYVVGTAHVSQ----------------------- 143
           LAK VV L CE++ +      GG+C VY+VGTAHVS+                       
Sbjct: 91  LAKSVVILTCESTAD------GGSCDVYLVGTAHVSKQSCLEVEAIISILKPEVVFVELC 144

Query: 144 -------------VPTMNEMIDMWKKKKMNTFGILYSWFLAKVC 174
                        +PTM++MI+ WK+K+ NTFGILY WFLAK+ 
Sbjct: 145 SSRLSVLKPQTLKIPTMSDMIESWKQKQ-NTFGILYGWFLAKIA 187



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.134    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,982,592
Number of extensions: 60797
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 108 (46.2 bits)