BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0494200 Os05g0494200|J05595
(108 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12490.2 | chr3:3960523-3961876 REVERSE LENGTH=235 86 5e-18
AT5G12140.1 | chr5:3923295-3923936 REVERSE LENGTH=102 84 2e-17
AT2G40880.1 | chr2:17057463-17057930 FORWARD LENGTH=126 75 7e-15
AT5G05110.1 | chr5:1507615-1508765 REVERSE LENGTH=233 69 5e-13
AT5G47550.1 | chr5:19286596-19286964 REVERSE LENGTH=123 50 3e-07
>AT3G12490.2 | chr3:3960523-3961876 REVERSE LENGTH=235
Length = 234
Score = 85.5 bits (210), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 13 VGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELEXXXXXXXXXXXXFMHYLTVEV 72
VGG+ D PA +N LARFAV EHN K NA+LE +H+LT+E+
Sbjct: 37 VGGVGDVPAN-QNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTLEI 95
Query: 73 KEPGGANKLYEAKVWERAWENFKQLQDFKPLDDATA 108
E G KLYEAKVW + W NFK+LQ+FKP DA A
Sbjct: 96 LE-AGQKKLYEAKVWVKPWLNFKELQEFKPASDAPA 130
>AT5G12140.1 | chr5:3923295-3923936 REVERSE LENGTH=102
Length = 101
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 5 AQQPRGVKVGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELEXXXXXXXXXXXXF 64
A Q G VGG+ D A NDL LARFAV EHN N LE +
Sbjct: 2 ADQQAGTIVGGVRDIDANA-NDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGT 60
Query: 65 MHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPLDDA 106
MH+LTVEV + G NK+YEAKV E+AWEN KQL+ F L D
Sbjct: 61 MHHLTVEVAD-GETNKVYEAKVLEKAWENLKQLESFNHLHDV 101
>AT2G40880.1 | chr2:17057463-17057930 FORWARD LENGTH=126
Length = 125
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 2 AEEAQQPRGVKVGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELEXXXXXXXXXX 61
+EE + + +GG+HD G +N LARFA+ EHN + N +LE +
Sbjct: 24 SEEKSTEKTMMLGGVHDLR-GNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVV 82
Query: 62 XXFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFK 101
M++LT+E KE G K +EAKVW + W NFKQLQ+FK
Sbjct: 83 AGTMYHLTLEAKE-GDQTKNFEAKVWVKPWMNFKQLQEFK 121
>AT5G05110.1 | chr5:1507615-1508765 REVERSE LENGTH=233
Length = 232
Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 9/97 (9%)
Query: 11 VKVGGIHDAP----AGRENDLTTVELARFAVAEHNSKANAMLELEXXXXXXXXXXXXFMH 66
+K+GG D+ G+E D ++A FAV EHN + NA+LEL ++
Sbjct: 43 MKLGGFSDSKNDWNGGKEID----DIALFAVQEHNRRENAVLELARVLKATEQVVAGKLY 98
Query: 67 YLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPL 103
LT+EV E G K+YEAKVW + W NFKQLQ+FK +
Sbjct: 99 RLTLEVIE-AGEKKIYEAKVWVKPWMNFKQLQEFKNI 134
>AT5G47550.1 | chr5:19286596-19286964 REVERSE LENGTH=123
Length = 122
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 12 KVGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELEXXXXXXXXXXXXFMHYLTVE 71
+VGG +P D VE+ FAV+E+N ++ + L+ E + L V
Sbjct: 27 RVGGW--SPISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVSGTNYRLKVA 84
Query: 72 VKEPGGANKLYEAKVWERAWENFKQLQDFKPLDDA 106
+ G +K Y A VW++ W F+ L F+P ++
Sbjct: 85 ANDGDGVSKNYLAIVWDKPWMKFRNLTSFEPANNG 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,011,520
Number of extensions: 55290
Number of successful extensions: 88
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 5
Length of query: 108
Length of database: 11,106,569
Length adjustment: 77
Effective length of query: 31
Effective length of database: 8,995,537
Effective search space: 278861647
Effective search space used: 278861647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)