BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0490200 Os05g0490200|AK101147
(384 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G36050.1 | chr1:13450467-13453683 FORWARD LENGTH=490 530 e-151
AT1G22200.1 | chr1:7837857-7840602 REVERSE LENGTH=387 518 e-147
AT3G22290.1 | chr3:7882082-7885260 FORWARD LENGTH=355 206 2e-53
AT4G27080.2 | chr4:13589156-13593335 FORWARD LENGTH=533 88 7e-18
AT3G20560.1 | chr3:7182182-7186390 FORWARD LENGTH=484 82 5e-16
AT1G50950.1 | chr1:18880465-18884043 FORWARD LENGTH=485 78 8e-15
>AT1G36050.1 | chr1:13450467-13453683 FORWARD LENGTH=490
Length = 489
Score = 530 bits (1364), Expect = e-151, Method: Compositional matrix adjust.
Identities = 244/382 (63%), Positives = 299/382 (78%), Gaps = 2/382 (0%)
Query: 1 MEGFLQKLKGLDAYPKVNEDFYKRXXXXXXXXXXXXXXXXXXFVSETRSYFYSATETKLV 60
M G L KL+ LDAYPK+NEDFY R F SE R Y ++ TETKL+
Sbjct: 1 MAGILNKLRNLDAYPKINEDFYSRTLSGGVITLLSSVVMFLLFFSELRLYLHTVTETKLI 60
Query: 61 VDTSRGERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIRHDIEKRRLDAHGNVIEARK 120
VDTSRGE LR+NFD+TFP++ C++LSVD MDISGE H D++HDI KRRLD++GN IEAR+
Sbjct: 61 VDTSRGETLRINFDITFPALACSILSVDAMDISGELHLDVKHDIIKRRLDSNGNTIEARQ 120
Query: 121 EGIGGAKIESPLQKHGGRLSKGEEYCGTCYGAEESDEQCCNSCEEVREAYKKKGWALTNP 180
+GIG KIE+PLQKHGGRL E YCG+CYGAE + CCNSCE+VREAY+KKGW +TNP
Sbjct: 121 DGIGATKIENPLQKHGGRLGHNETYCGSCYGAEAEEHDCCNSCEDVREAYRKKGWGVTNP 180
Query: 181 DLIDQCTREDFVERVKTQQGEGCNVHGFLDVSKVAGNLHFAPGKGFYESNINVPELSALE 240
DLIDQC RE F++RVK ++GEGCN++GFL+V+KVAGN HFAPGK F++S ++V +L A +
Sbjct: 181 DLIDQCKREGFLQRVKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDLLAFQ 240
Query: 241 H-GFNITHKINKLSFGTEFPGVVNPLDGAQWTQPASDGTYQYFIKVVPTIYTDLRGRKIH 299
FNI+HKIN+L++G FPGVVNPLD +W+Q + YQYFIKVVPT+YTD+RG I
Sbjct: 241 KDSFNISHKINRLTYGDYFPGVVNPLDKVEWSQDTPNAMYQYFIKVVPTVYTDIRGHTIQ 300
Query: 300 SNQFSVTEHFRDGNI-RPKPQPGVFFFYDFSPIKVIFTEENSSLLHYLTNLCAIVGGVFT 358
SNQFSVTEH + + + PGVFFFYD SPIKV FTEE+ S LH+LTN+CAIVGGVFT
Sbjct: 301 SNQFSVTEHVKSSEAGQLQSLPGVFFFYDLSPIKVTFTEEHISFLHFLTNVCAIVGGVFT 360
Query: 359 VSGIIDSFIYHGQKALKKKMEL 380
VSGIID+FIYHGQKA+KKKME+
Sbjct: 361 VSGIIDAFIYHGQKAIKKKMEI 382
>AT1G22200.1 | chr1:7837857-7840602 REVERSE LENGTH=387
Length = 386
Score = 518 bits (1333), Expect = e-147, Method: Compositional matrix adjust.
Identities = 237/385 (61%), Positives = 300/385 (77%), Gaps = 2/385 (0%)
Query: 1 MEGFLQKLKGLDAYPKVNEDFYKRXXXXXXXXXXXXXXXXXXFVSETRSYFYSATETKLV 60
M G + +L+ LDAYPK+NEDFY+R F SE + Y + TET+L
Sbjct: 1 MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQLYIHPVTETQLR 60
Query: 61 VDTSRGERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIRHDIEKRRLDAHGNVIEARK 120
VDTSRGE+LR+NFDVTFP++ C+++S+D+MDISGE+H D+RHDI KRRLD+ GNVIEA++
Sbjct: 61 VDTSRGEKLRINFDVTFPALQCSIISLDSMDISGERHLDVRHDIIKRRLDSSGNVIEAKQ 120
Query: 121 EGIGGAKIESPLQKHGGRLSKGEEYCGTCYGAEESDEQCCNSCEEVREAYKKKGWALTNP 180
+GIG KIE PLQKHGGRL E YCG+C+GAE SD+ CCNSCEEVREAY+KKGWAL++P
Sbjct: 121 DGIGHTKIEKPLQKHGGRLEHNETYCGSCFGAEASDDACCNSCEEVREAYRKKGWALSDP 180
Query: 181 DLIDQCTREDFVERVKTQQGEGCNVHGFLDVSKVAGNLHFAPGKGFYESNINVPELSALE 240
+ IDQC RE FV++VK ++GEGCNVHGFL+V+KVAGN HF PG+ F++S ++ +
Sbjct: 181 ESIDQCKREGFVQKVKDEEGEGCNVHGFLEVNKVAGNFHFIPGQSFHQSGFQFHDMLLFQ 240
Query: 241 HG-FNITHKINKLSFGTEFPGVVNPLDGAQWTQPASDGTYQYFIKVVPTIYTDLRGRKIH 299
G +NI+HK+N+L+FG FPGVVNPLDG QW Q G YQYFIKVVP+IYTD+ I
Sbjct: 241 QGNYNISHKVNRLAFGDFFPGVVNPLDGVQWNQGKQSGVYQYFIKVVPSIYTDVHQNTIQ 300
Query: 300 SNQFSVTEHFRDGNI-RPKPQPGVFFFYDFSPIKVIFTEENSSLLHYLTNLCAIVGGVFT 358
SNQFSVTEHF++ R + PGVFF+YD SPIKVIF E++ LH+LTN+CAIVGG+FT
Sbjct: 301 SNQFSVTEHFQNMEAGRMQSPPGVFFYYDLSPIKVIFEEQHVEFLHFLTNVCAIVGGIFT 360
Query: 359 VSGIIDSFIYHGQKALKKKMELGKY 383
VSGI+DSFIYHGQ+A+KKKME+GK+
Sbjct: 361 VSGIVDSFIYHGQRAIKKKMEIGKF 385
>AT3G22290.1 | chr3:7882082-7885260 FORWARD LENGTH=355
Length = 354
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/378 (33%), Positives = 197/378 (52%), Gaps = 33/378 (8%)
Query: 3 GFLQKLKGLDAYPKVNEDFYKRXXXXXXXXXXXXXXXXXXFVSETRSYFYSATETKLVVD 62
G Q L+ +DA+P+ + ++ F+ E Y + T ++ VD
Sbjct: 2 GVKQALRSIDAFPRAEDHLLQKTQSGAVVSIVGLLIMATLFLHELSYYLNTLTVHQMSVD 61
Query: 63 TSRGERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIRHDIEKRRLDAHGNVIEARKEG 122
RGE L ++ ++TFPS+PC +LSVD +D+SG+ D+ +I K RL++HG++I
Sbjct: 62 LKRGETLPIHVNMTFPSLPCDVLSVDAIDMSGKHEVDLDTNIWKLRLNSHGHII------ 115
Query: 123 IGGAKIESPLQKHGGRLSKGEEYCGTCYGAEESDEQCCNSCEEVREAYKKKGWALTNPDL 182
G + S L + KG E+ G + E+ N E EA G+
Sbjct: 116 --GTEYISDL------VEKGHEH-GHSPHKHDGKEEHKNETET--EALNILGF------- 157
Query: 183 IDQCTREDFVERVK--TQQGEGCNVHGFLDVSKVAGNLHFAPGKGFYESNINVPELS-AL 239
DQ E +++VK GEGC V+G LDV +VAGN H + + NI V ++
Sbjct: 158 -DQAA-ETMIKKVKQALADGEGCRVYGVLDVQRVAGNFHIS----VHGLNIYVAQMIFGG 211
Query: 240 EHGFNITHKINKLSFGTEFPGVVNPLDGAQWTQPASDGTYQYFIKVVPTIYTDLRGRKIH 299
N++H I+ LSFG ++PG+ NPLD + GT++Y+IK+VPT Y L +
Sbjct: 212 SKNVNVSHMIHDLSFGPKYPGIHNPLDDTNRILHDTSGTFKYYIKIVPTEYRYLSKDVLS 271
Query: 300 SNQFSVTEHFRDGNIRPKPQPGVFFFYDFSPIKVIFTEENSSLLHYLTNLCAIVGGVFTV 359
+NQ+SVTE+F + P V+F YD SPI V EE S LH +T LCA++GG F +
Sbjct: 272 TNQYSVTEYFTPMTEFDRTWPAVYFLYDLSPITVTIKEERRSFLHLITRLCAVLGGTFAL 331
Query: 360 SGIIDSFIYHGQKALKKK 377
+G++D +++ ++ KK
Sbjct: 332 TGMLDRWMFRFIESFNKK 349
>AT4G27080.2 | chr4:13589156-13593335 FORWARD LENGTH=533
Length = 532
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 31/199 (15%)
Query: 202 GCNVHGFLDVSKVAGNLHFAPGKGFYESNINVPELSALEHGFNITHKINKLSFG------ 255
GC V G++ V KV GNL + G + + N++H +N LSFG
Sbjct: 345 GCRVEGYMRVKKVPGNLMVSARSGSHSFD---------SSQMNMSHVVNHLSFGRRIMPQ 395
Query: 256 --TEFPGVV-------NPLDGAQWTQPASDG---TYQYFIKVVPTIYTDLRGRKIHSNQF 303
+EF + + LDG + G T ++++++V T G+ + +
Sbjct: 396 KFSEFKRLSPYLGLSHDRLDGRSFINQRDLGPNVTIEHYLQIVKTEVVKSNGQAL-VEAY 454
Query: 304 SVTEHFRDGNIRPKPQPGVFFFYDFSPIKVIFTEENSSLLHYLTNLCAIVGGVFTVSGII 363
T H P F ++ SP++V+ TE + S H++TN+CAI+GGVFTV+GI+
Sbjct: 455 EYTAH--SSVAHSYYLPVAKFHFELSPMQVLITENSKSFSHFITNVCAIIGGVFTVAGIL 512
Query: 364 DSFIYHGQKALKKKMELGK 382
DS ++H L KK+ELGK
Sbjct: 513 DSILHHSM-TLMKKIELGK 530
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 43 FVSETRSYFYSATETKLVVDTSR-GERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIR 101
F E +Y +T T ++VD S G+ LR++F+++FPS+ C SVD D+ G ++
Sbjct: 94 FGMELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGTNRLNVT 153
Query: 102 HDIEKRRLDAH 112
I K +D++
Sbjct: 154 KTIRKFSIDSN 164
>AT3G20560.1 | chr3:7182182-7186390 FORWARD LENGTH=484
Length = 483
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 32/201 (15%)
Query: 202 GCNVHGFLDVSKVAGNLHFAPGKGFYESNINVPELSALEHGFNITHKINKLSFG------ 255
GC V G++ V KV GNL + G + + N++H ++ SFG
Sbjct: 293 GCRVEGYVRVKKVPGNLVISAHSGAHSFD---------SSQMNMSHVVSHFSFGRMISPR 343
Query: 256 --TEFPGVV-------NPLDGAQWTQP---ASDGTYQYFIKVVPTIYTDLRGRKIHS--N 301
T+ ++ + LDG + ++ T +++++ V T R + HS
Sbjct: 344 LLTDMKRLLPYLGLSHDRLDGKAFINQHEFGANVTIEHYLQTVKTEVITRRSGQEHSLIE 403
Query: 302 QFSVTEHFRDGNIRPKPQPGVFFFYDFSPIKVIFTEENSSLLHYLTNLCAIVGGVFTVSG 361
++ T H + P F ++ SP++++ TE S H++TNLCAI+GGVFTV+G
Sbjct: 404 EYEYTAH--SSVAQTYYLPVAKFHFELSPMQILITENPKSFSHFITNLCAIIGGVFTVAG 461
Query: 362 IIDSFIYHGQKALKKKMELGK 382
I+DS I+H L KK+ELGK
Sbjct: 462 ILDS-IFHNTVRLVKKVELGK 481
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 7 KLKGLDAYPKVNEDFYKRXXXXXXXXXXXXXXXXXXFVSETRSYFYSATETKLVVD-TSR 65
KLK +D Y K+ D + F E SY T T ++VD +S
Sbjct: 6 KLKSVDFYRKIPRDLTEASLSGAGLSIVAALFMMFLFGMELSSYLEVNTTTAVIVDKSSD 65
Query: 66 GERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIRHDIEKRRLDAH 112
G+ LR++F+++FP++ C SVD D+ G +I + K +D H
Sbjct: 66 GDFLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKFPIDPH 112
>AT1G50950.1 | chr1:18880465-18884043 FORWARD LENGTH=485
Length = 484
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 32/201 (15%)
Query: 202 GCNVHGFLDVSKVAGNLHFAPGKGFYESNINVPELSALEHGFNITHKINKLSFGTEFPGV 261
GC + G++ KV G L + G + + + N++H + L+FGT
Sbjct: 294 GCRIEGYVRAKKVPGELVISAHSGAHSFDAS---------QMNMSHIVTHLTFGTMVSER 344
Query: 262 V---------------NPLDGAQWT---QPASDGTYQYFIKVVPTIYTDLRGRKIHS--N 301
+ + L+G + Q ++ T +++++++ T R + HS
Sbjct: 345 LWTDMKRLLPYLGQSYDRLNGKSFINERQLDANVTIEHYLQIIKTEVISRRSGQEHSLIE 404
Query: 302 QFSVTEHFRDGNIRPKPQPGVFFFYDFSPIKVIFTEENSSLLHYLTNLCAIVGGVFTVSG 361
++ T H R P F ++ SP++V+ +E S H++TN+CAI+GGVFTV+G
Sbjct: 405 EYEYTAH--SSVARSYHYPEAKFHFELSPMQVLISENPKSFSHFITNVCAIIGGVFTVAG 462
Query: 362 IIDSFIYHGQKALKKKMELGK 382
I+DS I+ + KK+ELGK
Sbjct: 463 ILDS-IFQNTVRMVKKIELGK 482
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 6 QKLKGLDAYPKVNEDFYKRXXXXXXXXXXXXXXXXXXFVSETRSYFYSATETKLVVD-TS 64
K+K +D Y K+ D + F E SY T T ++VD +S
Sbjct: 5 SKIKSVDFYRKIPRDLTEASLSGAGLSIVAALAMLFLFGMELSSYLAINTSTSVIVDKSS 64
Query: 65 RGERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIRHDIEKRRLDAH 112
G+ L ++F+++FP++ C SVD D+ G +I I K +D H
Sbjct: 65 DGDFLNIDFNISFPALSCEFASVDVSDVFGTHRLNISKTIRKVPIDPH 112
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,640,356
Number of extensions: 384049
Number of successful extensions: 941
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 9
Length of query: 384
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 284
Effective length of database: 8,364,969
Effective search space: 2375651196
Effective search space used: 2375651196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)