BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0489700 Os05g0489700|AK063398
(335 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56850.1 | chr3:21046554-21047894 REVERSE LENGTH=298 204 6e-53
AT2G41070.1 | chr2:17131249-17132208 FORWARD LENGTH=263 188 3e-48
AT1G49720.2 | chr1:18400826-18402362 FORWARD LENGTH=404 100 1e-21
AT1G45249.3 | chr1:17165420-17167415 REVERSE LENGTH=428 95 5e-20
AT3G44460.1 | chr3:16080115-16081722 REVERSE LENGTH=332 92 3e-19
AT3G19290.3 | chr3:6687956-6689784 FORWARD LENGTH=433 85 7e-17
AT5G42910.1 | chr5:17203908-17205211 FORWARD LENGTH=371 79 3e-15
AT4G34000.1 | chr4:16296008-16297971 FORWARD LENGTH=455 73 3e-13
AT2G36270.1 | chr2:15204980-15206571 REVERSE LENGTH=443 62 3e-10
AT1G03970.1 | chr1:1018237-1019049 FORWARD LENGTH=271 52 6e-07
AT2G17770.2 | chr2:7723103-7723951 FORWARD LENGTH=196 50 1e-06
>AT3G56850.1 | chr3:21046554-21047894 REVERSE LENGTH=298
Length = 297
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 143/311 (45%), Positives = 165/311 (53%), Gaps = 34/311 (10%)
Query: 32 QGLARQGSLYGLTLNEVQSQLG---EPLLSMNLDELLKSVFPXXXXXXXXXXXXXXXXQS 88
Q L RQ SLY LTL+EVQ+ LG + L SMNLDELLKSV
Sbjct: 14 QSLNRQSSLYSLTLDEVQNHLGSSGKALGSMNLDELLKSVCSVEANQPSSMAVNGGAAAQ 73
Query: 89 QPALGLQRQGSITMPPELSKKTVDEVWKGIQDVPKXXXXXXXXXXXXXQPTLGEMTLEDF 148
+ GL RQGS+T+P +LSKKTVDEVWK IQ + QPTLGEMTLED
Sbjct: 74 E---GLSRQGSLTLPRDLSKKTVDEVWKDIQ---QNKNGGSAHERRDKQPTLGEMTLEDL 127
Query: 149 LVKAGVVTDPNDLPG-NMD---VVXXXXXXXXXTSDLNAGAQWLQQYHQQALEPQHPSIG 204
L+KAGVVT+ +PG N D ++ W+Q YHQ
Sbjct: 128 LLKAGVVTE--TIPGSNHDGPVGGGSAGSGAGLGQNITQVGPWIQ-YHQ----------- 173
Query: 205 APYMATHLAPQPLAVATGAVLDPIYSDGQITSPMLGALSDPQTPGRKRCATGEIADKLVE 264
P M PQP A V D Q S ++G LSD QTPGRKR A+GE+ +K VE
Sbjct: 174 LPSM-----PQPQAFMPYPVSDMQAMVSQ--SSLMGGLSDTQTPGRKRVASGEVVEKTVE 226
Query: 265 RRQKRMIKNRESAARSRARKQAYTXXXXXXXXXXXXXXXXXXXXXXXDEILNSAPPPEPK 324
RRQKRMIKNRESAARSRARKQAYT ++IL S PPP+PK
Sbjct: 227 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRKQKEVEKILPSVPPPDPK 286
Query: 325 YQLRRTSSAAF 335
QLRRTSSA F
Sbjct: 287 RQLRRTSSAPF 297
>AT2G41070.1 | chr2:17131249-17132208 FORWARD LENGTH=263
Length = 262
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/308 (42%), Positives = 161/308 (52%), Gaps = 63/308 (20%)
Query: 32 QGLARQGSLYGLTLNEVQSQLG---EPLLSMNLDELLKSVFPXXXXXXXXXXXXXXXXQS 88
Q L RQ SLY L L+EVQ+ LG +PL SMNLDELLK+V P
Sbjct: 14 QSLTRQNSLYSLKLHEVQTHLGSSGKPLGSMNLDELLKTVLPPAEE-------------- 59
Query: 89 QPALGLQRQGSITMPPELSKKTVDEVWKGIQDVPKXXXXXXXXXXXXXQPTLGEMTLEDF 148
GL RQGS+T+P +LSKKTVDEVW+ IQ QPTLGE+TLED
Sbjct: 60 ----GLVRQGSLTLPRDLSKKTVDEVWRDIQQ--DKNGNGTSTTTTHKQPTLGEITLEDL 113
Query: 149 LVKAGVVTDPNDLPGNMDVVXXXXXXXXXTSDLNAGAQWLQQYHQQALEPQHPSIGAPYM 208
L++AGVVT+ + +VV ++ + QW++ +HQ PQ Y
Sbjct: 114 LLRAGVVTE--TVVPQENVV-----------NIASNGQWVEYHHQ----PQQQQGFMTY- 155
Query: 209 ATHLAPQPLAVATGAVLDPIYSDGQITSPMLGALSD-PQTPGRKRCATGEIADKLVERRQ 267
P+ V M+G LSD PQ PGRKR A GEI +K VERRQ
Sbjct: 156 -------PVCEMQDMV-------------MMGGLSDTPQAPGRKRVA-GEIVEKTVERRQ 194
Query: 268 KRMIKNRESAARSRARKQAYTXXXXXXXXXXXXXXXXXXXXXXXDEILNSAPPPEPKYQL 327
KRMIKNRESAARSRARKQAYT ++IL S PPP+PK++L
Sbjct: 195 KRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKLRRLKEVEKILPSEPPPDPKWKL 254
Query: 328 RRTSSAAF 335
RRT+SA+
Sbjct: 255 RRTNSASL 262
>AT1G49720.2 | chr1:18400826-18402362 FORWARD LENGTH=404
Length = 403
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 34 LARQGSLYGLTLNEVQSQLGEP---LLSMNLDELLKSVFPXXXXXXXXXXXXXXXXQSQP 90
LARQ SLY LT +E+QS LGEP SMN+DELLK+++
Sbjct: 23 LARQSSLYSLTFDELQSTLGEPGKDFGSMNMDELLKNIWTAEDTQAFMTTTSSVAAPGPS 82
Query: 91 AL-----GLQRQGSITMPPELSKKTVDEVWKGIQDVPKXXXXXXXXXXXXXQPTLGEMTL 145
GLQRQGS+T+P LS+KTVDEVWK + + + Q TLGEMTL
Sbjct: 83 GFVPGGNGLQRQGSLTLPRTLSQKTVDEVWKYL-NSKEGSNGNTGTDALERQQTLGEMTL 141
Query: 146 EDFLVKAGVVTDPN 159
EDFL++AGVV + N
Sbjct: 142 EDFLLRAGVVKEDN 155
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 36/45 (80%), Gaps = 3/45 (6%)
Query: 245 PQTPGR-KRCATGEIADKLVERRQKRMIKNRESAARSRARKQAYT 288
P GR +R TG +K+VERRQKRMIKNRESAARSRARKQAYT
Sbjct: 294 PYVFGRGRRSNTG--LEKVVERRQKRMIKNRESAARSRARKQAYT 336
>AT1G45249.3 | chr1:17165420-17167415 REVERSE LENGTH=428
Length = 427
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 34 LARQGSLYGLTLNEVQSQLGEPLLSMNLDELLKSVFPXXXXXXXXXXXXXXXXQSQPALG 93
L RQGS+Y LT +E QS +G+ SMN+DELLK+++ Q L
Sbjct: 21 LTRQGSIYSLTFDEFQSSVGKDFGSMNMDELLKNIWSAEETQAMASGVVPVLGGGQEGLQ 80
Query: 94 LQRQGSITMPPELSKKTVDEVWKGIQDVPKXXXXXXX---------XXXXXXQPTLGEMT 144
LQRQGS+T+P LS+KTVD+VWK + V Q TLGE+T
Sbjct: 81 LQRQGSLTLPRTLSQKTVDQVWKDLSKVGSSGVGGSNLSQVAQAQSQSQSQRQQTLGEVT 140
Query: 145 LEDFLVKAGVVTD 157
LE+FLV+AGVV +
Sbjct: 141 LEEFLVRAGVVRE 153
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 213 APQPLAVATGAV--LDPIYSDGQITSPMLGALSDPQ---TPGRKRCATGEIADKLVERRQ 267
A P A+ GAV + P+ S+G S + P G R +K+VERRQ
Sbjct: 281 AAIPGALGVGAVSPVTPLSSEGIGKSNGDSSSLSPSPYMFNGGVRGRKSGTVEKVVERRQ 340
Query: 268 KRMIKNRESAARSRARKQAYT 288
+RMIKNRESAARSRARKQ +T
Sbjct: 341 RRMIKNRESAARSRARKQIFT 361
>AT3G44460.1 | chr3:16080115-16081722 REVERSE LENGTH=332
Length = 331
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/262 (35%), Positives = 131/262 (50%), Gaps = 31/262 (11%)
Query: 34 LARQGSLYGLTLNEVQSQLGEPLLSMNLDELLKSVFPXXXXXXXXXXXXXXXXQSQPALG 93
+ RQ S+ LTL+E+Q + G+ +MN+DE L +++ + +PA+
Sbjct: 35 VGRQNSILSLTLDEIQMKSGKSFGAMNMDEFLANLWTTVEENDNEGGGAHNDGE-KPAV- 92
Query: 94 LQRQGSITMPPELSKKTVDEVWKGIQDV-----PKXXXXXXXXXXXXXQPTLGEMTLEDF 148
L RQGS+++P L KKTVDEVW IQ+ P Q TLGE+TLEDF
Sbjct: 93 LPRQGSLSLPVPLCKKTVDEVWLEIQNGVQQHPPSSNSGQNSAENIRRQQTLGEITLEDF 152
Query: 149 LVKAGVVTDPNDLPGNMDVVXXXXXXXXXTSDLNAGAQWLQQYHQQALEPQHPSIGAPYM 208
LVKAGVV +P L M + +SD ++ L Q+ +
Sbjct: 153 LVKAGVVQEP--LKTTMRM---------SSSDFGYNPEF-----GVGLHCQNQNNYGDNR 196
Query: 209 ATHLAPQPLAVATGAVLDPIYSDGQITSPMLGALSDPQTPGRKRCATG--EIADKLVERR 266
+ + +P G + +G+ ++ L L + +KR G EI L+ERR
Sbjct: 197 SVYSENRPFYSVLGESSSCMTGNGR-SNQYLTGLDAFRI--KKRIIDGPPEI---LMERR 250
Query: 267 QKRMIKNRESAARSRARKQAYT 288
Q+RMIKNRESAARSRAR+QAYT
Sbjct: 251 QRRMIKNRESAARSRARRQAYT 272
>AT3G19290.3 | chr3:6687956-6689784 FORWARD LENGTH=433
Length = 432
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 71/142 (50%), Gaps = 16/142 (11%)
Query: 34 LARQGSLYGLTLNEVQSQLGEP---LLSMNLDELLKSVFPXXXXXXXXXXXX-------- 82
LARQ S+Y LT +E+Q+ LG P SMN+DELLKS++
Sbjct: 34 LARQSSVYSLTFDELQNTLGGPGKDFGSMNMDELLKSIWTAEEAQAMAMTSAPAATAVAQ 93
Query: 83 XXXXQSQPALGLQRQGSITMPPELSKKTVDEVWKGIQDVPKXXXXXXXXXXXXXQP---- 138
P LQRQGS+T+P +S+KTVDEVWK + P
Sbjct: 94 PGAGIPPPGGNLQRQGSLTLPRTISQKTVDEVWKCLITKDGNMEGSSGGGGESNVPPGRQ 153
Query: 139 -TLGEMTLEDFLVKAGVVTDPN 159
TLGEMTLE+FL +AGVV + N
Sbjct: 154 QTLGEMTLEEFLFRAGVVREDN 175
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 33/38 (86%), Gaps = 2/38 (5%)
Query: 251 KRCATGEIADKLVERRQKRMIKNRESAARSRARKQAYT 288
+R TG +K++ERRQ+RMIKNRESAARSRARKQAYT
Sbjct: 341 RRSNTG--LEKVIERRQRRMIKNRESAARSRARKQAYT 376
>AT5G42910.1 | chr5:17203908-17205211 FORWARD LENGTH=371
Length = 370
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 18/122 (14%)
Query: 34 LARQGSLYGLTLNEVQSQLGEPLLSMNLDELLKSVFPXXXXXXXXXXXXXXXXQSQPALG 93
L+RQGS+Y T+++ Q+ LG SMN+DEL+K + + G
Sbjct: 20 LSRQGSIYSWTVDQFQTSLGLDCGSMNMDELVKHI----------------SSAEETQEG 63
Query: 94 LQRQGSITMPPELSKKTVDEVWKGIQDVPKXXXX--XXXXXXXXXQPTLGEMTLEDFLVK 151
QRQGS T+PP LSK+ V EVWK I + Q TLGE+TLE+F ++
Sbjct: 64 SQRQGSTTLPPTLSKQNVGEVWKSITEEKHTNNNGGVTNITHLQGQQTLGEITLEEFFIR 123
Query: 152 AG 153
AG
Sbjct: 124 AG 125
>AT4G34000.1 | chr4:16296008-16297971 FORWARD LENGTH=455
Length = 454
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 37/161 (22%)
Query: 34 LARQGSLYGLTLNEVQSQ----LGEPLLSMNLDELLKSVFPXXXXXXXXXXXXXXXXQSQ 89
L RQ S++ LT +E Q+ +G+ SMN+DELLK+++ S
Sbjct: 27 LTRQNSVFSLTFDEFQNSWGGGIGKDFGSMNMDELLKNIWTAEESHSMMGNNTSYTNISN 86
Query: 90 PALG------------------------------LQRQGSITMPPELSKKTVDEVWKGI- 118
G LQRQGS+T+P +S+K VD+VWK +
Sbjct: 87 GNSGNTVINGGGNNIGGLAVGVGGESGGFFTGGSLQRQGSLTLPRTISQKRVDDVWKELM 146
Query: 119 --QDVPKXXXXXXXXXXXXXQPTLGEMTLEDFLVKAGVVTD 157
D+ Q TLGEMTLE+FLV+AGVV +
Sbjct: 147 KEDDIGNGVVNGGTSGIPQRQQTLGEMTLEEFLVRAGVVRE 187
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%), Gaps = 1/44 (2%)
Query: 245 PQTPGRKRCATGEIADKLVERRQKRMIKNRESAARSRARKQAYT 288
P GR R TG + +K++ERRQKRMIKNRESAARSRARKQAYT
Sbjct: 355 PYMFGRVR-KTGAVLEKVIERRQKRMIKNRESAARSRARKQAYT 397
>AT2G36270.1 | chr2:15204980-15206571 REVERSE LENGTH=443
Length = 442
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 35/40 (87%), Gaps = 1/40 (2%)
Query: 249 GRKRCATGEIADKLVERRQKRMIKNRESAARSRARKQAYT 288
GRKR G + +K+VERRQ+RMIKNRESAARSRARKQAYT
Sbjct: 342 GRKRVVDGPV-EKVVERRQRRMIKNRESAARSRARKQAYT 380
>AT1G03970.1 | chr1:1018237-1019049 FORWARD LENGTH=271
Length = 270
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 32/48 (66%)
Query: 240 GALSDPQTPGRKRCATGEIADKLVERRQKRMIKNRESAARSRARKQAY 287
G++ T G++ E DK +RQKRMIKNRESAARSR RKQAY
Sbjct: 164 GSMGGGVTRGKRGRVMMEAMDKAAAQRQKRMIKNRESAARSRERKQAY 211
>AT2G17770.2 | chr2:7723103-7723951 FORWARD LENGTH=196
Length = 195
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 249 GRKRCATGEIADKLVERRQKRMIKNRESAARSRARKQAYT 288
G+KR + D +RR KRMIKNRESAARSRARKQAYT
Sbjct: 112 GKKRGQDSD--DTRGDRRYKRMIKNRESAARSRARKQAYT 149
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,166,385
Number of extensions: 166637
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 16
Length of query: 335
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,392,385
Effective search space: 1980602860
Effective search space used: 1980602860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)