BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0488500 Os05g0488500|AK109649
         (241 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01170.1  | chr3:58043-58690 FORWARD LENGTH=216                103   7e-23
AT5G15260.1  | chr5:4953646-4954350 REVERSE LENGTH=235            100   5e-22
AT3G06180.1  | chr3:1871705-1873554 FORWARD LENGTH=242             94   5e-20
AT5G19025.1  | chr5:6355220-6357083 REVERSE LENGTH=260             94   9e-20

>AT3G01170.1 | chr3:58043-58690 FORWARD LENGTH=216
          Length = 215

 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 76/160 (47%), Gaps = 16/160 (10%)

Query: 83  PYVRMVAAEVGGLVSDLDAAGVASSYYAPFXXXXXXXXXXXXXXXXXXXXXXHRARRCGK 142
           PYV+++  +   + SDL           P                          +RCGK
Sbjct: 71  PYVKLITLKSIEVFSDLSLLVKQEILQNPIVYGSLALSIFCAAISTWLVILLCTMQRCGK 130

Query: 143 PRCRGLRKAVEFDIQLETEECVRGQQQXXXXXXXXXXXXXXXXXXXXVQLGDAHRELEAE 202
           P C+GLRKAVEFDIQLETEECV+                              HRELEAE
Sbjct: 131 PNCKGLRKAVEFDIQLETEECVKSSSNKRGMFELPRVH---------------HRELEAE 175

Query: 203 LRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKK-VRRIKK 241
           L+KMAPPNGR VL+FR+ CGC   R+ V G KK  R+IKK
Sbjct: 176 LKKMAPPNGRAVLVFRARCGCSVRRLVVSGPKKQQRKIKK 215



>AT5G15260.1 | chr5:4953646-4954350 REVERSE LENGTH=235
          Length = 234

 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 65/109 (59%), Gaps = 15/109 (13%)

Query: 138 RRCGKPRCRGLRKA-VEFDIQLETEECVRGQQQXXXXXXXXXXXXXXXXXXXXVQLGDAH 196
            RCGKP C+GLRKA  EFDIQLETE+CV+                            D H
Sbjct: 136 HRCGKPNCKGLRKANAEFDIQLETEDCVKSSNSGKSVSKKGLFELPR----------DHH 185

Query: 197 RELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKK----VRRIKK 241
           RELEAEL+KMAPPNGR VL+FR+ CGC  GR+EV G KK     R++KK
Sbjct: 186 RELEAELKKMAPPNGRAVLVFRAKCGCSVGRLEVPGPKKQQLQQRKVKK 234



>AT3G06180.1 | chr3:1871705-1873554 FORWARD LENGTH=242
          Length = 241

 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 9/106 (8%)

Query: 136 RARRCGKPRCRGLRKAVEFDIQLETEECVRGQQQXXXXXXXXXXXXXXXXXXXXVQLGDA 195
           R+R+C  P+C+GL+KA+EFD+QL+TEECV+                         +    
Sbjct: 131 RSRKCRNPKCKGLKKAMEFDLQLQTEECVKSGATKEIDRLPWKGGS---------ESNPD 181

Query: 196 HRELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIKK 241
           +  L AELR+MAPPNGR VL+FRS CGCP  ++E WG K+ RR KK
Sbjct: 182 YECLRAELRRMAPPNGRAVLLFRSRCGCPVAKLEGWGPKRGRRHKK 227



>AT5G19025.1 | chr5:6355220-6357083 REVERSE LENGTH=260
          Length = 259

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 9/106 (8%)

Query: 136 RARRCGKPRCRGLRKAVEFDIQLETEECVRGQQQXXXXXXXXXXXXXXXXXXXXVQLGDA 195
           R+R+C  P+C+G++KA+EFD+QL+TEECV+                         +    
Sbjct: 149 RSRKCRNPKCKGMKKAMEFDLQLQTEECVKSGS---------VKEIDRLPWKGGSESNPD 199

Query: 196 HRELEAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWGAKKVRRIKK 241
           +  L AELRKMAP NGR VLIFRS CGCP  ++E WG K+ RR KK
Sbjct: 200 YECLRAELRKMAPVNGRAVLIFRSKCGCPIAKLEGWGPKRSRRHKK 245



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,939,624
Number of extensions: 62683
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 6
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)