BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0481400 Os05g0481400|AK068705
(279 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58280.1 | chr5:23567338-23568670 FORWARD LENGTH=274 145 3e-35
AT3G19184.1 | chr3:6637555-6639035 FORWARD LENGTH=278 142 3e-34
AT5G42700.1 | chr5:17122171-17124177 FORWARD LENGTH=212 134 4e-32
AT4G33280.1 | chr4:16047357-16049310 REVERSE LENGTH=338 49 2e-06
>AT5G58280.1 | chr5:23567338-23568670 FORWARD LENGTH=274
Length = 273
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 95/125 (76%), Gaps = 1/125 (0%)
Query: 111 RVASYEQQQRAFKKAERLQNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEY 170
+ ASYE++ AFK AE+ Q SL +P FVK+MVRSHV SCFWLGLP+RFC + P +
Sbjct: 99 KFASYEEKVGAFKAAEKFQRSLKSPHPYFVKSMVRSHVYSCFWLGLPSRFCADNFPEETM 158
Query: 171 KMVLEDEEGGEFDSVYIGNRTGLSGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAV 230
++ LEDEEG +++VYIG R GLSGGW+ FA+ H L+DGD+L+FEL EP +FKIY+ K
Sbjct: 159 EIELEDEEGEVYEAVYIGRRAGLSGGWKRFALDHKLDDGDALLFELVEPKKFKIYVFKG- 217
Query: 231 DEDAN 235
+E+AN
Sbjct: 218 NENAN 222
>AT3G19184.1 | chr3:6637555-6639035 FORWARD LENGTH=278
Length = 277
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 137/248 (55%), Gaps = 12/248 (4%)
Query: 18 RRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASP-KPRK-KFEVGATEXXXXXXXX 75
R RV EN K + +L + K+++SL ++ S++ SP KPR + V +E
Sbjct: 12 RLNRVEENKKRMGELNLNKLAQSLRVSSSSSSSSKPSPAKPRTMRIPVDFSEVRRSSRAK 71
Query: 76 XXX-XYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRV-ASYEQQQRAFKKAERLQNSLD 133
YKE F R R + + RD RV AS + + AF +AE+LQ+SLD
Sbjct: 72 GPPPSYKE-------FGLEPLERRPRRSSRRRDLLNRVYASDDARMYAFDRAEKLQSSLD 124
Query: 134 PENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGL 193
E SF K M++SHV+ FWLGLP FCK H+P ++ M L DEE E + Y+ + GL
Sbjct: 125 SEYASFTKPMLQSHVTGGFWLGLPLPFCKAHMPKRDVIMTLVDEEEEESQAKYLAQKNGL 184
Query: 194 SGGWRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKAVDEDANESEPADEEAIGDKDTSTE 253
SGGWRGFA+ H L DGD++VF L FK+YII+ V++DAN +E D D + E
Sbjct: 185 SGGWRGFAIDHQLVDGDAVVFHLIARTTFKVYIIR-VNDDANNDSDGNEVNDDDSDGNEE 243
Query: 254 DAAEQDDS 261
D ++S
Sbjct: 244 DRDNDNES 251
>AT5G42700.1 | chr5:17122171-17124177 FORWARD LENGTH=212
Length = 211
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 113/213 (53%), Gaps = 26/213 (12%)
Query: 18 RRKRVLENLKHLEDLGIKKMSKSLLEAARLQKSTRASPKPRKKFEVGATEXXXXXXXXXX 77
R KRV EN K +E L + K+S+ L ST P KK + T
Sbjct: 13 RLKRVEENKKRMEALNLPKLSQIL-------NSTSVKISPMKKRSIPRTP---------- 55
Query: 78 XXYKENFDELNSFLCRRRGSRIRSTEQGRDYTGRV-ASYEQQQRAFKKAERLQNSLDPEN 136
++ ++ +RRG + RD RV S E + A +A + Q+ L
Sbjct: 56 ---EKKMVDVKRVHIQRRG-----VGKKRDLLNRVYVSEEIRDEAISRANKFQDELGSGY 107
Query: 137 PSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLEDEEGGEFDSVYIGNRTGLSGG 196
PSFVK+M++SHVS FWLGLP +FCK HL + + L DEEG E++++Y+ + GLSGG
Sbjct: 108 PSFVKSMLQSHVSGGFWLGLPVQFCKSHLGLHDGVITLIDEEGEEYETIYLARKNGLSGG 167
Query: 197 WRGFAMHHNLEDGDSLVFELAEPDRFKIYIIKA 229
W GFA+ HNL GD+LVFEL FK+YI +
Sbjct: 168 WMGFAVAHNLAYGDTLVFELVRRTAFKVYITRV 200
>AT4G33280.1 | chr4:16047357-16049310 REVERSE LENGTH=338
Length = 337
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 123 KKAERL-QNSLDPENPSFVKTMVRSHVSSCFWLGLPTRFCKLHLPPKEYKMVLE-DEEGG 180
KKA L + ++ P+ F+ M RSHV S +L +P ++C ++ ++V++ D+
Sbjct: 208 KKALSLAKRAISPD--GFLVFMKRSHVVSKCFLTIPYKWCVKNMLITRQEVVMQVDQTKW 265
Query: 181 EFDSVYIGNRT--GLSGGWRGFAMHHNLEDGDSLVFELA----EPDRFKIYIIKAVD-ED 233
E G R G+S GW+ F +NL +GD VFE A +P +YI + + E
Sbjct: 266 EMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFRGEETER 325
Query: 234 ANESEPA 240
N +P
Sbjct: 326 TNNVDPV 332
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,507,657
Number of extensions: 235072
Number of successful extensions: 964
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 975
Number of HSP's successfully gapped: 4
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)