BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0481000 Os05g0481000|AK059369
(254 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32070.2 | chr1:11534851-11536289 REVERSE LENGTH=259 262 1e-70
AT1G26220.1 | chr1:9071157-9071750 FORWARD LENGTH=198 107 4e-24
AT4G19985.1 | chr4:10830542-10831711 REVERSE LENGTH=238 61 5e-10
>AT1G32070.2 | chr1:11534851-11536289 REVERSE LENGTH=259
Length = 258
Score = 262 bits (670), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/221 (58%), Positives = 156/221 (70%), Gaps = 13/221 (5%)
Query: 46 QGKKRAAATWSLKAGLWDSLRSGFLKSNNSTETVXXXXXXXXXXXXXX----XXXXXXXX 101
Q R T L+A W+S+RSGF+K+NNST+ V
Sbjct: 38 QHGSRKLKTLRLRANFWESIRSGFVKNNNSTQLVEPPSIVNDEEEETEPLLPVEFTLVER 97
Query: 102 XXADGSTEQIIFSSAGDVNVYDLQALCDKVGWPRRPLTKIAASLRNSYLVATLHSVT--- 158
DG E+IIFSS G+++VYDLQ LCDKVGWPRRPL K+AA+L+NSY+VATLHSV
Sbjct: 98 NLEDGLVEEIIFSSGGEIDVYDLQGLCDKVGWPRRPLVKLAAALKNSYMVATLHSVMKSS 157
Query: 159 ------MPSKAEGEERKQLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALMEKVIRT 212
E ++ K+LIGMARATSDHAFNATIWDVLVDP YQGQGLGKAL+EK++R
Sbjct: 158 SDSDSSEGGDGEKQQEKKLIGMARATSDHAFNATIWDVLVDPEYQGQGLGKALVEKLVRA 217
Query: 213 LLQRDISNITLFADNKVVDFYKNLGFEADPQGIKGMFWYPR 253
LLQRDI NI+LFAD++VVDFY+NLGFEADP+GIKGMFWYP+
Sbjct: 218 LLQRDIGNISLFADSQVVDFYQNLGFEADPEGIKGMFWYPK 258
>AT1G26220.1 | chr1:9071157-9071750 FORWARD LENGTH=198
Length = 197
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 9/132 (6%)
Query: 119 VNVYDLQALCDKVGWPRRPLTKIAASLRNSYLVATLHSVTMPSKAEGEERKQLIGMARAT 178
+N+ L ++ VG+PRR KI +L+++ + + E E+ ++ + ARAT
Sbjct: 67 LNLDQLNSVFAAVGFPRRDTAKIEVALQHTDALLWV---------EYEKTRRPVAFARAT 117
Query: 179 SDHAFNATIWDVLVDPSYQGQGLGKALMEKVIRTLLQRDISNITLFADNKVVDFYKNLGF 238
D FNA IWDV+VDPS+Q GLGKA+ME++I L + I NI L+++ +V+ FY+ LGF
Sbjct: 118 GDGVFNAIIWDVVVDPSFQSCGLGKAVMERLIEDLQVKGICNIALYSEPRVLGFYRPLGF 177
Query: 239 EADPQGIKGMFW 250
+DP GIKGM +
Sbjct: 178 VSDPDGIKGMVF 189
>AT4G19985.1 | chr4:10830542-10831711 REVERSE LENGTH=238
Length = 237
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 170 QLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALMEKVIRTLLQRDISNITLFADNKV 229
QL+G RA SD+ A+I D++V PS Q G+GK ++ +++R L RDI +I
Sbjct: 151 QLVGFGRAYSDYGLTASIHDLMVLPSLQRMGIGKLIVNRIVRLLTSRDIYDIAALCFEDE 210
Query: 230 VDFYKNLGFEADPQGIKGMFW 250
F+K GF D G M +
Sbjct: 211 RPFFKACGFGDDRMGSTTMMF 231
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,463,190
Number of extensions: 150597
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 3
Length of query: 254
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 158
Effective length of database: 8,474,633
Effective search space: 1338992014
Effective search space used: 1338992014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)