BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0478900 Os05g0478900|Os05g0478900
(782 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697 125 7e-29
AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691 82 1e-15
>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
Length = 696
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/450 (21%), Positives = 189/450 (42%), Gaps = 48/450 (10%)
Query: 95 AKCNYCHKTLS---ARSTGGTGHLLRHIKSCKPRNVGALCQSML---------------- 135
A C C+++ + GT HL RHI C +++
Sbjct: 86 AFCKGCNQSFAYSNGNKVAGTSHLKRHI-------FKGTCPALIHTHDNDNNPLMSTPYT 138
Query: 136 --------RFNADGSVSQW-EYKPDVARTELVRLIAREDLPLTFGQSAAFEEYIQNAHNP 186
R+ + + S + + D R E+ ++I D PL Q F ++Q+ P
Sbjct: 139 PKTDTPRRRYRSQNNASPYVAFNQDKCRQEIAKMIIMHDYPLHMVQHPGFVSFVQSIQ-P 197
Query: 187 RFSVVSRQTISRDVFKVFDKRRAMLIDTLKSVSS-VALTSDIWSGNAKEDYLSVVAHFVN 245
F VS + D + + ++ +L+ + LT D W+ Y+ + AH+++
Sbjct: 198 HFDAVSFNNVQGDCVATYLAEKQNVMKSLEGIPGRFCLTLDFWTSKLTLGYVFITAHYID 257
Query: 246 SNWQLEKRILGLVLIDVSHNAENISERVLSVVQEYGLTNKIFSITLDNASANSKAMDSLK 305
S+W+++K++L +++ E +S V + V E+GL K+F++T ++ ++NS A+++++
Sbjct: 258 SDWKIQKKLLNVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPASNS-AVENIR 316
Query: 306 PALS----GYIGDLYLHQRCACHIINLIVKAGLEIFKPMLQDFRTAISFINASNQRIALY 361
P L G + + C + K LE K ++++ R ++ + S +
Sbjct: 317 PQLCIKNPGILDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERF 376
Query: 362 KNFCIAKGIRPRK-FGLDMDVRWNATYLMLKHLLPHRVIFSVFIASHHPMADGQPLLTDL 420
+ K LD +WN TY+ML + +FS + + P P D
Sbjct: 377 TELKEQLQVPSEKVLSLDDQTQWNTTYMMLVAASELKEVFSC-LDTADPDYKKPPSAED- 434
Query: 421 HWTIAETVLLFLEQFYDSTVILSGVYYPTSPLIMHHILEIAGHLN--TYENDWNLRNVVV 478
W E + FL+ +++ L P++ H + + L+ D + +
Sbjct: 435 -WRHVEALCTFLKPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAK 493
Query: 479 PMKNKFLSYWSEIPFLYSFAFILDPRAKIR 508
M+ K YW + + + A ++DPR K++
Sbjct: 494 TMQEKVDKYWRDCSLVLAMAVVMDPRFKMK 523
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 659 VSSTANMNASELFAYLDSDTVNQYDDDFNILNWWHEHNHTYPILSILARDVLTVPVSTIS 718
+ +T SEL YLD +T+ +F++L+WW ++ YP LS +ARD+L++PVS +
Sbjct: 582 METTGQNLKSELDQYLD-ETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAA 640
Query: 719 SESAFSLTGRIIEERRRRLAPDMVQALALIKDW 751
+ F + R ++E + L P+ V+AL ++W
Sbjct: 641 FDYVFDMEPREMDEYKTSLRPETVEALICAREW 673
>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
Length = 690
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 188/479 (39%), Gaps = 50/479 (10%)
Query: 83 FEERNGAQVRVSAKCNYCHKTLSARSTGGTGHLLRHIKSCKPRNVGALCQSMLRFNADGS 142
FE ++ R KC +C ++ S + TG+L RH+ + P A + S
Sbjct: 61 FETAPDSKTR---KCKFCGQSYSIAT--ATGNLGRHLTNRHPGYDKAAADVV----TSSS 111
Query: 143 VSQWE---YKPDVARTELVRL------------IAREDLPLTFGQSAAFEEYIQNAHN-- 185
V Q KP +++++ +L +A LP S E ++ N+
Sbjct: 112 VPQTPPAVVKPSQSQSKVPQLDYDHLNWLVLKWLALSSLP----PSTVDETWLGNSFKFL 167
Query: 186 -PRFSVVSRQTISRDVFKVFDKRRAMLIDTLKSVSS-VALTSDIWSGNAKEDYLSVVAHF 243
P + + + +VF R + TL+ + S V++T W+ Y+SV +
Sbjct: 168 KPSIQLWPAEKYKAILDEVFTSMRGDVKTTLEHIQSKVSVTLSFWNSYENIFYMSVTGQW 227
Query: 244 VNSNWQLEKRILGLVLIDVSHNAENISERVLSVVQEYGLTNKIFSITLDNASANSKAMDS 303
++ NW + +L + I I +L V++ Y + ++I T DN+ A S
Sbjct: 228 IDENWSSHRLLLDICRIPYPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSENAIHACHS 287
Query: 304 LKPALSGYIGDLYLHQRCACHIINLIVKAGLEIFKPMLQDFRTAISFINASNQRIALYKN 363
LK G + + CA +N I+ GL KP++ R +NAS + +
Sbjct: 288 LKEYFDGQKVLPFCYIPCAAQTLNDIIDEGLATIKPIISKVREFTQELNASTELSDDFIQ 347
Query: 364 FCIAKGIRPRKFGLDMDVRWNATYLMLKHLLPHRVIFSVFIASHHPMADGQPLLTDLHWT 423
A K +D RW+ Y M+ L I + + + +L+ +
Sbjct: 348 LTTAYQEGNWKLPIDASSRWSGNYQMVNILCKASKSLDSVIRKNEDALENRMMLSSVEKN 407
Query: 424 IAETV--LLFLEQFYDSTVILSGVYYPTSPLIMHHILEIAGHLNTYEN-----DWNLRNV 476
V L L+ F+ +T + T L + + I+ + T + DW LR
Sbjct: 408 AVTIVHNYLDLDSFHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDW-LRTC 466
Query: 477 VVPMKNKFLSYWSEIPFLYSF-AFILDPRAKIRGFSNVLQIMGQLISGDYSAYLNEVRA 534
M K SY +++ ++++ ILDPR K + + +Y++E R+
Sbjct: 467 AESMAQKARSYNTQVCNVFTYITAILDPRIKTEYIPETINL---------ESYIDEARS 516
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 661 STANMNASELFAYLDSDTVNQYDDDFNILNWWHEHNHTYPILSILARDVLTVPVSTISSE 720
S +N EL YL V D +L+WW ++ YP LS +ARD L V ++ + E
Sbjct: 561 SMSNNVVDELTQYLSESIVPMQTD---VLDWWKVNSGRYPRLSNMARDFLAVQATSAAPE 617
Query: 721 SAFSLTGRIIEERRRRLAPDMVQALALIKDWEQADAKMQHTMENLE 766
F G I++++ + D Q++ I+ W +A K+++ ++
Sbjct: 618 EIFCGKGEEIDKQKYCMPHDSTQSVICIRSWIEAGMKLKYKCSEID 663
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,247,926
Number of extensions: 550902
Number of successful extensions: 1330
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1326
Number of HSP's successfully gapped: 4
Length of query: 782
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 676
Effective length of database: 8,200,473
Effective search space: 5543519748
Effective search space used: 5543519748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 116 (49.3 bits)