BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0466700 Os05g0466700|Os05g0466700
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08330.1  | chr4:5255384-5256525 REVERSE LENGTH=165            132   7e-32
AT2G17705.1  | chr2:7692506-7692889 FORWARD LENGTH=128             60   4e-10

>AT4G08330.1 | chr4:5255384-5256525 REVERSE LENGTH=165
          Length = 164

 Score =  132 bits (332), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/129 (52%), Positives = 88/129 (68%), Gaps = 3/129 (2%)

Query: 15  KEVAYSCGYCGYALNLSSSTRNTANIGSKYGKQIRKGVISFFAIDESRFTQTDEVSCMPY 74
           + V YSCG CGY LNLSS+ R T+ IGSKYGK ++ G+ISFF IDE RF+Q DE  CMP+
Sbjct: 34  RHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPH 93

Query: 75  FHSRRSWGLFRKRTRLICRKCGGRIGNAYEDEDSTLYDGSDDLHMSSEGYSMSSGKKYVI 134
           F SR SWGLFR RT+L+CRKC   IGNA +++       + +   +S    + S  KY I
Sbjct: 94  F-SRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTSP--RIGSVTKYDI 150

Query: 135 KINALQPST 143
           +I +LQPS+
Sbjct: 151 RIRSLQPSS 159



>AT2G17705.1 | chr2:7692506-7692889 FORWARD LENGTH=128
          Length = 127

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 19  YSCGYCGYALNLSSSTRNTANIGSKYGKQIRKGVISFFAIDESRFTQTDEVSCMPYFHSR 78
           Y+C  CG  LNL+ +     +    Y +   KG +SF A+D  +F    E   MP+F + 
Sbjct: 6   YTCKECGSDLNLNPNDLFPPDF---YFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFETL 62

Query: 79  RSWGLFRKRTRLICRKCGGRIGNAYED 105
             WG+ RKRT++ C  C   IG  Y+D
Sbjct: 63  NYWGIQRKRTKIKCTSCNHLIGYIYDD 89



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,551,213
Number of extensions: 141517
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)