BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0463400 Os05g0463400|AK100354
(520 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G09670.1 | chr3:2966637-2968817 FORWARD LENGTH=727 145 7e-35
AT5G02950.1 | chr5:690953-692851 FORWARD LENGTH=633 141 9e-34
AT5G40340.1 | chr5:16131654-16134680 REVERSE LENGTH=1009 132 4e-31
AT3G27860.1 | chr3:10326128-10328086 FORWARD LENGTH=653 103 2e-22
AT3G05430.1 | chr3:1567745-1571037 FORWARD LENGTH=966 100 2e-21
AT5G27650.1 | chr5:9785511-9789094 FORWARD LENGTH=1073 96 4e-20
AT3G48190.1 | chr3:17797628-17828361 FORWARD LENGTH=3846 64 2e-10
>AT3G09670.1 | chr3:2966637-2968817 FORWARD LENGTH=727
Length = 726
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 168 SGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQLKPFM 227
S LVW+K++ HPWWPG++FD S A++ A KH KK GS LV YFG TFAW + S++KPF
Sbjct: 200 SDLVWAKVRSHPWWPGQVFDASAATDKAKKHFKK-GSFLVTYFGDCTFAWNEASRIKPFR 258
Query: 228 SNYSQMANQSNSDAFISSVNLALEEISRRILSGMCCFCLPEDLSDNCMSYMVENSGLRDG 287
++SQMA QS+ FI +++ ALEE+SRRI G+ C C+ E++ + V N G+R+
Sbjct: 259 QHFSQMAKQSSLPDFIDAIDFALEEVSRRIEFGLACSCISEEVYQKIKTQNVINPGIRED 318
Query: 288 VTC----SKVTRSEILECFNAENFLSYLRSLALFPG-QGGELLDLVIACSQLTSFFQSKG 342
+ KV+ + F N + Y++ LA P + L LV +QL +F + KG
Sbjct: 319 SSSIHGGDKVSSAVF---FEPANLVGYVKRLACSPSYDATDALQLVSQRAQLLAFNRWKG 375
Query: 343 CHELASF 349
+L F
Sbjct: 376 YTDLPEF 382
>AT5G02950.1 | chr5:690953-692851 FORWARD LENGTH=633
Length = 632
Score = 141 bits (355), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 145/288 (50%), Gaps = 46/288 (15%)
Query: 168 SGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQLKPFM 227
S LVW+KL+ +PWWPG +FD S AS+ A++H KK G+ LVAYFG TFAW + SQ+KPF
Sbjct: 98 SDLVWAKLRSYPWWPGLVFDKSVASKAAMRHFKK-GNVLVAYFGDCTFAWNNASQIKPFH 156
Query: 228 SNYSQMANQSNSDAFISSVNLALEEISRRILSGMCCFCLPEDLSDNCMSYMVENSGLR-- 285
N+SQM QSNS F +++ AL+E+SRR+ G+ C C+ E+ + + + N+G+R
Sbjct: 157 QNFSQMQEQSNSAEFRDAIDCALDEVSRRVEFGLSCSCVSEEAYNKLKTQNIINAGIRED 216
Query: 286 -----------DGVTCSKVTRSEILECFNAENFLSYLRSLALFP-GQGGELLDLVIACSQ 333
DG++ F + Y++ LA FP E L VI +Q
Sbjct: 217 SSVRYGGDKLSDGIS------------FEPAKLVDYMKHLACFPCYDATEKLQFVINRAQ 264
Query: 334 LTSFFQSKGCHELASFGSGSELVDDGMDSSSTKNVLLPEAVTYEQKPSEGKPKRRRIKTC 393
+ +F Q K + + V+ +S V + E ++ +++ ++ K
Sbjct: 265 VLAFQQWKDYSHFIDYETFVRSVESAATLASLPEVNMDEGISAKKRKTDYK--------- 315
Query: 394 VKKPQNDLELTEENPISSLNNECTFVDCMGLNIIGKVKGK-RSEKRRK 440
++ E T+E +S L T G K+ GK SEK+RK
Sbjct: 316 -----DNAEQTKEKTLSDL----TVKKRCGSRSTEKLDGKSHSEKKRK 354
>AT5G40340.1 | chr5:16131654-16134680 REVERSE LENGTH=1009
Length = 1008
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 109/189 (57%), Gaps = 5/189 (2%)
Query: 163 YGFRASGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQ 222
+G+ VW K+K HPWWPG+I+D SDAS+LALK K+KG LVA FG TFAWC SQ
Sbjct: 123 HGYCVGDFVWGKIKNHPWWPGQIYDPSDASDLALK-IKQKGKLLVACFGDGTFAWCGASQ 181
Query: 223 LKPFMSNYSQMANQSNSDAFISSVNLALEEISRRILSGMCCFCLPEDLSDNCMSYMVENS 282
LKPF ++ + + SNS +F+ +V A+EEI R I + C C E+ S +V N+
Sbjct: 182 LKPFAESFKECSKVSNSRSFLGAVEEAVEEIGRHIERVLVCDC-AEEKKHEFDSPLVNNA 240
Query: 283 GLRDGVTCSKVTRSEILECFNAEN--FLSYLRSLALFPGQGGELLDLVIACSQLTSFFQS 340
G+++GV V R I ++ L ++S A G LL+L I ++++F++S
Sbjct: 241 GIKEGVLVRDVRREMISSLLIGKHGEILKDVKSFAETVSFSG-LLELEILKRKVSAFYRS 299
Query: 341 KGCHELASF 349
+ L +
Sbjct: 300 NRGYGLTEY 308
>AT3G27860.1 | chr3:10326128-10328086 FORWARD LENGTH=653
Length = 652
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 106/191 (55%), Gaps = 14/191 (7%)
Query: 164 GFRASGLVW-SKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNT-FAWCDES 221
GF VW + WWPG+I+D+ DAS+LALK +KG LVAYFG + F WC+
Sbjct: 60 GFHVGDFVWGEEANSQQWWPGQIYDSLDASDLALKTM-QKGKLLVAYFGDGSFFGWCNPL 118
Query: 222 QLKPFMSNYSQMANQSNSDAFISSVNLALEEISRRILSGMCCFCLPEDLSDNCMSYMVEN 281
+LKPF+ N+ + + S+S F+ +V A+ EI + + C +D + +S + N
Sbjct: 119 ELKPFLENFKEFSKMSDSRRFLLAVEDAVREIGEHVEKFLVC----DDAA--LVSSVALN 172
Query: 282 SGLRDGVTCSKVTRSEILECFNAEN---FLSYLRSLALFPGQGGELLDLVIACSQLTSFF 338
G++DGV V R +I+ EN L ++ LA+ + +LL++ + ++++F+
Sbjct: 173 LGIKDGVVVPDV-RRKIISSLVLENPGVVLEDVKRLAM-TVRFDDLLEIEVLRRKISAFY 230
Query: 339 QSKGCHELASF 349
+ KG +LA F
Sbjct: 231 RCKGRFDLAKF 241
>AT3G05430.1 | chr3:1567745-1571037 FORWARD LENGTH=966
Length = 965
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 163 YGFRASGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQ 222
YGF +VW K+K HPWWPG+IF+ + AS +++ KK G LVA+FG N++ W D ++
Sbjct: 131 YGFEVGDMVWGKVKSHPWWPGQIFNEAFASP-SVRRVKKMGYVLVAFFGDNSYGWFDPAE 189
Query: 223 LKPFMSNYSQMANQSNSDAFISSVNLALEEISRRILSGMCCFC 265
L PF + + + Q++SD F +V A+ E+ RR G+ C C
Sbjct: 190 LIPFEPHVKEKSQQTSSDHFAKAVEEAMNEVGRRSALGLTCKC 232
>AT5G27650.1 | chr5:9785511-9789094 FORWARD LENGTH=1073
Length = 1072
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 10/164 (6%)
Query: 163 YGFRASGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQ 222
YGF LVW K+K HPWWPG IF+ + AS +++ ++ LVA+FG +++ W D ++
Sbjct: 169 YGFEVGDLVWGKVKSHPWWPGHIFNEAFASP-SVRRMRRIDHVLVAFFGDSSYGWFDPAE 227
Query: 223 LKPFMSNYSQMANQSNSDAFISSVNLALEEISRRILSGMCCFC------LPEDLSDNCMS 276
L PF N + + Q+ S F+ +V A +E SRR G+ C C P ++ D +
Sbjct: 228 LIPFEPNLEEKSQQTVSKHFVRAVEEAKDEASRRSALGLTCKCRNPYNFRPSNVED-YFA 286
Query: 277 YMVENSGLRDGVTCSKVTRSEILECFNAENFLSYLRSLALFPGQ 320
V + L+ + ++ S + F +S+++ LAL P +
Sbjct: 287 VDVPDYELQAVYSVDQIKNSR--DKFLPAETISFVKQLALAPQE 328
>AT3G48190.1 | chr3:17797628-17828361 FORWARD LENGTH=3846
Length = 3845
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 165 FRASGLVWSKLKGHPWWPGEIFDTSDASELALKHQKKKGSHLVAYFGSNTFAWCDESQLK 224
F LVW K WWPGE+ D ++ + + SHLV++F S S+LK
Sbjct: 106 FLVGNLVWVMTKYKKWWPGEVVDFKADAKESFMVRSIGQSHLVSWFAS--------SKLK 157
Query: 225 PFMSNYSQMANQSNSDAFISSVNLALEEISRRILSGMCCFCLPEDLSDNCMSYMVENSGL 284
PF ++ Q+ NQ N + F ++ A+ +S + M C C+ + + +V +
Sbjct: 158 PFKESFEQVLNQRNDNGFFDALQKAMSLLSNSLKLDMTCSCIADG------NGIVSAQNI 211
Query: 285 RDGVTCSKVTRSEILECFNAENFLSYLRSLALFPGQGGELLDLVIACSQLTSFFQSKGCH 344
+ R ++ + F++ L+++A G +L+ + SQL++F+ G
Sbjct: 212 TTRKNKPLILREFSVDRLEPKEFVTQLKNIAKCVLNAG-VLESTVMQSQLSAFYTLFGHK 270
Query: 345 EL 346
++
Sbjct: 271 QI 272
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,751,735
Number of extensions: 475373
Number of successful extensions: 907
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 7
Length of query: 520
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 417
Effective length of database: 8,282,721
Effective search space: 3453894657
Effective search space used: 3453894657
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)