BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0463300 Os05g0463300|Os05g0463300
(538 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52290.1 | chr3:19394441-19396196 FORWARD LENGTH=431 82 9e-16
AT5G03040.1 | chr5:710380-712406 REVERSE LENGTH=462 78 9e-15
AT3G09710.2 | chr3:2976834-2978900 REVERSE LENGTH=469 67 2e-11
AT2G26410.1 | chr2:11234651-11236719 REVERSE LENGTH=528 60 2e-09
AT3G59690.1 | chr3:22049572-22051479 FORWARD LENGTH=518 51 1e-06
>AT3G52290.1 | chr3:19394441-19396196 FORWARD LENGTH=431
Length = 430
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 120 EELAAVKIQKACRVYLGRRS-QXXXXXXXXXXXXXXXXVKRQTYEALYCMQTMTRVQTQI 178
EE+AA+KIQ A R Y+ RR+ + V+RQ L MQT+ RVQ QI
Sbjct: 107 EEIAAIKIQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARVQYQI 166
Query: 179 HSRRVKTEEDKKALKSQVHVKQSLDRIKIGESWDHGHQSKEQIETVLTMKQEXXXXXXXX 238
RR++ EDK+AL Q+ K + D K GE+W+ S+E++E + KQ
Sbjct: 167 RERRLRLSEDKQALTRQLQQKHNKDFDKTGENWNDSTLSREKVEANMLNKQVATMRREKA 226
Query: 239 XXXXFSHQETF 249
FSHQ T+
Sbjct: 227 LAYAFSHQNTW 237
>AT5G03040.1 | chr5:710380-712406 REVERSE LENGTH=462
Length = 461
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 120 EELAAVKIQKACRVYLGRRS-QXXXXXXXXXXXXXXXXVKRQTYEALYCMQTMTRVQTQI 178
EE AA+ IQ R YL RR+ + VKRQ L CMQT++RVQ+QI
Sbjct: 114 EEAAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRVQSQI 173
Query: 179 HSRRVKTEEDKKALKSQV---HVKQSLDRIKIGESWDHGHQSKEQIETVLTMKQEXXXXX 235
+RR++ E+ +A + Q+ H K+ L +K G++W+ QSKE++E L K E
Sbjct: 174 RARRIRMSEENQARQKQLLQKHAKE-LAGLKNGDNWNDSIQSKEKVEANLLSKYEATMRR 232
Query: 236 XXXXXXXFSHQETF 249
+SHQ+ +
Sbjct: 233 ERALAYSYSHQQNW 246
>AT3G09710.2 | chr3:2976834-2978900 REVERSE LENGTH=469
Length = 468
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 120 EELAAVKIQKACRVYLGRR-SQXXXXXXXXXXXXXXXXVKRQTYEALYCMQTMTRVQTQI 178
EE AA+ IQ R +L RR SQ V+RQ L CMQT++RVQ+QI
Sbjct: 107 EEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQI 166
Query: 179 HSRRVKTEEDKKALKSQV---HVKQSLDRIKI--------------GESWDHGHQSKEQI 221
SRR++ E+ +A Q+ H K+ L +K+ G +W++ +QSKEQ+
Sbjct: 167 RSRRIRMSEENQARHKQLLQKHAKE-LGGLKLFMRLFKFIVVSSDNGGNWNYSNQSKEQV 225
Query: 222 ETVLTMKQEXXXXXXXXXXXXFSHQETFICASLAAS 257
E + K E F+HQ+ S A+
Sbjct: 226 EAGMLHKYEATMRRERALAYAFTHQQNLKSFSKTAN 261
>AT2G26410.1 | chr2:11234651-11236719 REVERSE LENGTH=528
Length = 527
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 120 EELAAVKIQKACRVYLGRRS-QXXXXXXXXXXXXXXXXVKRQTYEALYCMQTMTRVQTQI 178
EE AA+KIQ A R Y RR+ + VKRQ L MQT+TR+QTQI
Sbjct: 147 EETAAIKIQNAYRCYTARRTLRALRGMARLKSLLQGKYVKRQMNAMLSSMQTLTRLQTQI 206
Query: 179 HSRRVKTEEDKKA----LKSQVHVKQSLDRIKIGESWDHGHQSKEQIETVLTMKQEXXXX 234
RR + + K ++ + H K++ + ++D ++SKEQI ++E
Sbjct: 207 QERRNRLSAENKTRHRLIQQKGHQKENHQNLVTAGNFDSSNKSKEQIVARSVNRKEASVR 266
Query: 235 XXXXXXXXFSHQETFICAS 253
+SHQ+T+ +S
Sbjct: 267 RERALAYAYSHQQTWRNSS 285
>AT3G59690.1 | chr3:22049572-22051479 FORWARD LENGTH=518
Length = 517
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 124 AVKIQKACRVYLGRRS-QXXXXXXXXXXXXXXXXVKRQTYEALYCMQTMTRVQTQIHSRR 182
A+KIQ A R Y+ RRS + VKRQT A+ MQ + RVQTQ+ SRR
Sbjct: 172 AIKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQVQSRR 231
Query: 183 VKTEEDKKALKSQVHVKQSLDRIKIGESWDHGHQSKEQIETVLTMKQEXXXXXXXXXXXX 242
++ E+ +A + K L ++ + WD +KE+ + L K +
Sbjct: 232 IQMLEN-RARNDKDDTK--LVSSRMSDDWDDSVLTKEEKDVRLHRKIDAMIKRERSMAYA 288
Query: 243 FSHQ 246
+SHQ
Sbjct: 289 YSHQ 292
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,769,236
Number of extensions: 202772
Number of successful extensions: 505
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 6
Length of query: 538
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 435
Effective length of database: 8,282,721
Effective search space: 3602983635
Effective search space used: 3602983635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)