BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0460600 Os05g0460600|AK072931
(536 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59750.2 | chr5:24073397-24075411 FORWARD LENGTH=544 669 0.0
AT5G64300.1 | chr5:25718459-25720790 FORWARD LENGTH=544 593 e-170
AT2G22450.1 | chr2:9530654-9532691 FORWARD LENGTH=477 468 e-132
>AT5G59750.2 | chr5:24073397-24075411 FORWARD LENGTH=544
Length = 543
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/469 (69%), Positives = 381/469 (81%), Gaps = 34/469 (7%)
Query: 76 SASFRTVGAKITQETGDFFVSDAEGDPDKPTDGFSSIDEAIGALHEGK------------ 123
SASF TV A+IT ET DFFVSDAEGDPD PT G+SSI+ A+ AL +GK
Sbjct: 68 SASFETVDAEITPETDDFFVSDAEGDPDCPTQGYSSIELALQALRKGKVCSLTIFLKTSD 127
Query: 124 ----------------------FVIAVDDESGDNEGDLVMAATLADPESIAFMIRNGSGI 161
FVI VDDE+GD EG+L+MAATL P+ IAF+I+NGSGI
Sbjct: 128 YDDLFLQLYRFGLTKKLSLMFQFVIVVDDETGDVEGNLIMAATLTSPKDIAFLIKNGSGI 187
Query: 162 ISVGMKEEDLTRLMIPMMSPXXXXXXXXXXXXTVTVDARVGISTGVSAADRAKTIFTLAS 221
+SVGMK+E+L RL + +MSP T+TVDA+ G STGVSA+DRA T+ L+S
Sbjct: 188 VSVGMKKENLERLSLTLMSPEMEDEDSSAPTFTITVDAKSGTSTGVSASDRAMTVLALSS 247
Query: 222 PDSKPTDLRRPGHIFPLKYRNGGVLKRAGHTEASVDLVALAGLRPVSVLSTVINPVDGSM 281
D+KP D RRPGH+FPLKYR+GGVL+RAGHTEASVDL+ LAGLRP+SVLS +++ DGSM
Sbjct: 248 LDAKPDDFRRPGHVFPLKYRDGGVLRRAGHTEASVDLMILAGLRPLSVLSAILDQEDGSM 307
Query: 282 AGMPVLKQMALEHDIPIVSIADLIRYRRKREKLVELIAVSRLPTKWGLFRAYCYQSKLDG 341
A +P +K++A EHDIPIVS+ DLIRYRRKR+KLVE I VSRLPTKWGLF+AYCY+SKLDG
Sbjct: 308 ASLPYMKKLATEHDIPIVSLTDLIRYRRKRDKLVERITVSRLPTKWGLFQAYCYRSKLDG 367
Query: 342 TEHIAVAKGDIGDGEDVLVRVHSECLTGDILGSARCDCGNQLDLAMQLIDKAGRGVLVYL 401
TE+IA+ KG++G+GED+LVRVHSECLTGDI GSARCDCGNQLDLAM+LI+K GRGV+VYL
Sbjct: 368 TENIALVKGNVGNGEDILVRVHSECLTGDIFGSARCDCGNQLDLAMELIEKEGRGVVVYL 427
Query: 402 RGHEGRGIGLGQKLRAYNLQDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLM 461
RGHEGRGIGLG KLRAYNLQD+GHDTVQANVELGL++DSREYGIGAQ+LRD+GVRTMRLM
Sbjct: 428 RGHEGRGIGLGHKLRAYNLQDEGHDTVQANVELGLSIDSREYGIGAQMLRDIGVRTMRLM 487
Query: 462 TNNPAKFVGLKGYGLAVVGRVPVISPITKENQRYLETKRTKMGHVYGSD 510
TNNPAKF GLKGYGLAVVGRVPV++PITKEN+RY+ETKR KMGH+Y SD
Sbjct: 488 TNNPAKFTGLKGYGLAVVGRVPVVTPITKENRRYMETKRKKMGHIYISD 536
>AT5G64300.1 | chr5:25718459-25720790 FORWARD LENGTH=544
Length = 543
Score = 593 bits (1530), Expect = e-170, Method: Compositional matrix adjust.
Identities = 301/471 (63%), Positives = 360/471 (76%), Gaps = 10/471 (2%)
Query: 55 NLNDPLKESNNGPVL-----QGFNGSSASFRTVGAKITQETGDFFVS-DAEGDPDKPTDG 108
N N PL +NG ++ + S S T+ A + FV+ D + + D PT G
Sbjct: 71 NGNTPL---SNGSLIDDRTEEPLEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPG 127
Query: 109 FSSIDEAIGALHEGKFVIAVDDESGDNEGDLVMAATLADPESIAFMIRNGSGIISVGMKE 168
FSSI EAI + +GK V+ VDDE +NEGDLVMAA LA PE++AF++R+G+GI+ V MKE
Sbjct: 128 FSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVCVSMKE 187
Query: 169 EDLTRLMIPMMSPXXXXXXXXXXXXTVTVDARVGISTGVSAADRAKTIFTLASPDSKPTD 228
+DL RL +P+M TVTVDA+ G +TGVSA DRA TI +LAS DSKP D
Sbjct: 188 DDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTTGVSARDRATTILSLASRDSKPED 247
Query: 229 LRRPGHIFPLKYRNGGVLKRAGHTEASVDLVALAGLRPVSVLSTVINPVDGSMAGMPVLK 288
RPGHIFPLKYR GGVLKRAGHTEASVDL LAGL PV VL +++ DGSMA +P L+
Sbjct: 248 FNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLDPVGVLCEIVDD-DGSMARLPKLR 306
Query: 289 QMALEHDIPIVSIADLIRYRRKREKLVELIAVSRLPTKWGLFRAYCYQSKLDGTEHIAVA 348
+ A E+++ +VSIADLIRYRRKR+KLVE + +R+PT WG F AYCY+S LDG EHIA+
Sbjct: 307 EFAAENNLKVVSIADLIRYRRKRDKLVERASAARIPTMWGPFTAYCYRSILDGIEHIAMV 366
Query: 349 KGDIGDGEDVLVRVHSECLTGDILGSARCDCGNQLDLAMQLIDKAGRGVLVYLRGHEGRG 408
KG+IGDG+D+LVRVHSECLTGDI GSARCDCGNQL L+MQ I+ GRGVLVYLRGHEGRG
Sbjct: 367 KGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALSMQQIEATGRGVLVYLRGHEGRG 426
Query: 409 IGLGQKLRAYNLQDDGHDTVQANVELGLAVDSREYGIGAQILRDMGVRTMRLMTNNPAKF 468
IGLG KLRAYNLQD G DTV+AN ELGL VDSREYGIGAQI+RD+GVRTM+LMTNNPAK+
Sbjct: 427 IGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKY 486
Query: 469 VGLKGYGLAVVGRVPVISPITKENQRYLETKRTKMGHVYGSDLPGNVPEEF 519
VGLKGYGLA+VGRVP++S ITKEN+RYLETKRTKMGH+YG G+V E+
Sbjct: 487 VGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKGDVVEKI 537
>AT2G22450.1 | chr2:9530654-9532691 FORWARD LENGTH=477
Length = 476
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/410 (58%), Positives = 303/410 (73%), Gaps = 10/410 (2%)
Query: 78 SFRTVGAKITQETGDF-FVSDAEGDPDKPTDGFSSIDEAIGALHEGKFVIAVDDESGDNE 136
SF T+ A++ T D V D E D D+PTDGF+SI +AI + GK V+ VDDE +NE
Sbjct: 74 SFGTLAAEMIPTTMDSPEVEDEEFDLDRPTDGFASIPQAIEDIRHGKMVVVVDDEDRENE 133
Query: 137 GDLVMAATLADPESIAFMIRNGSGIISVGMKEEDLTRLMIPMMSPXXXXXXXXXXXXTVT 196
GDL+MAA+LA PE++AF++++G+GI+ V MK EDL RL +P+M TV+
Sbjct: 134 GDLIMAASLATPEAMAFVVKHGTGIVCVSMKGEDLERLELPLMVTRKDNEEKLRTAFTVS 193
Query: 197 VDARVGISTGVSAADRAKTIFTLASPDSKPTDLRRPGHIFPLKYRNGGVLKRAGHTEASV 256
VDA+ G STGVSA DRA+TI TLAS DSKP D RPGHIFPL+YR GGVLKRAGHTEASV
Sbjct: 194 VDAKKGTSTGVSARDRAQTILTLASKDSKPEDFNRPGHIFPLRYREGGVLKRAGHTEASV 253
Query: 257 DLVALAGLRPVSVLSTVINPVDGSMAGMPVLKQMALEHDIPIVSIADLIRYRRKREKLVE 316
DL LAGL PVSVL +++ DGSMA +P L+Q A E+++ ++SIADLIRYRRKRE+LVE
Sbjct: 254 DLTVLAGLEPVSVLCEIVDD-DGSMARLPRLRQFAQENNLKLISIADLIRYRRKRERLVE 312
Query: 317 LIAVSRLPTKWGLFRAYCYQSKLDGTEHIAVAKGDIGDGEDVLVRVHSECLTGDILGSAR 376
AV+ +PT WG F+A+C++S LDG EHIA+ KG+IGDG+D+LVRVH+EC+T DI G++
Sbjct: 313 FTAVAPIPTMWGPFKAHCFKSLLDGVEHIAMVKGEIGDGKDILVRVHAECITDDIFGNS- 371
Query: 377 CDCGNQLDLAMQLIDKAGRGVLVYLRGHEGRGIGLGQKLRAYNLQDDGHDTVQANVELGL 436
G QL +AM+LI++ GRGV VYLRG E +GI L K R YN D + V
Sbjct: 372 -SGGKQLAIAMRLIEENGRGVFVYLRGPESKGIDLSHKPRTYNTNSDQAEGVS------F 424
Query: 437 AVDSREYGIGAQILRDMGVRTMRLMTNNPAKFVGLKGYGLAVVGRVPVIS 486
V SREYGIGAQILRD+GVR M++MTNNPA +VGLKGYGL++ G+VP+I+
Sbjct: 425 PVASREYGIGAQILRDLGVREMKVMTNNPAHYVGLKGYGLSISGKVPLIT 474
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,434,293
Number of extensions: 507698
Number of successful extensions: 1196
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1191
Number of HSP's successfully gapped: 4
Length of query: 536
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 433
Effective length of database: 8,282,721
Effective search space: 3586418193
Effective search space used: 3586418193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)