BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0455700 Os05g0455700|AK070824
(301 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53900.2 | chr3:19956914-19959006 REVERSE LENGTH=297 342 1e-94
AT4G26510.1 | chr4:13384503-13387920 FORWARD LENGTH=470 90 2e-18
AT5G40870.1 | chr5:16375021-16378384 FORWARD LENGTH=487 87 1e-17
AT3G27190.1 | chr3:10039504-10042917 REVERSE LENGTH=484 86 3e-17
AT3G27440.1 | chr3:10155555-10157931 FORWARD LENGTH=466 84 7e-17
AT1G55810.1 | chr1:20861273-20864003 FORWARD LENGTH=467 82 4e-16
>AT3G53900.2 | chr3:19956914-19959006 REVERSE LENGTH=297
Length = 296
Score = 342 bits (878), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 155/217 (71%), Positives = 191/217 (88%)
Query: 85 SSGGQMLVFVPPHPLIKHWVSVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEI 144
+ +MLVFVPPHPLIKHW+SVLRNEQTPC +F++A+AELGRLL+YEASR+WLPT+ GEI
Sbjct: 74 NGSNRMLVFVPPHPLIKHWISVLRNEQTPCPVFRNAIAELGRLLMYEASREWLPTVVGEI 133
Query: 145 QTPVAVSSVEFIDPREPVMVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIY 204
+P+ +SVEFIDPREP+ VVPILRAGLA+AE+ASSVLPA K YHLG+ RDE+TL PS+Y
Sbjct: 134 MSPMGPASVEFIDPREPIAVVPILRAGLALAEHASSVLPANKIYHLGVSRDEKTLLPSVY 193
Query: 205 LNNLPDKIPEGTRVLVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLS 264
LN LPD+ P+ +RV +VDP+LATGGTI+AA+DLL ERG++ +QIKV+ A+AAPPAL KL+
Sbjct: 194 LNKLPDEFPKNSRVFLVDPVLATGGTIMAAMDLLKERGLSVQQIKVICAIAAPPALSKLN 253
Query: 265 NKFPGLHVYTGTIDSEVDERGFIVPGLGDAGDRSFAT 301
KFPGLHVY G ID EV+E+G+I+PGLGDAGDRSF T
Sbjct: 254 EKFPGLHVYAGIIDPEVNEKGYIIPGLGDAGDRSFGT 290
>AT4G26510.1 | chr4:13384503-13387920 FORWARD LENGTH=470
Length = 469
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 8/204 (3%)
Query: 100 IKHWVSVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVAV--SSVEFID 157
I+ +++R+ QT F L RL++ E LP ++ TP S V+F
Sbjct: 269 IRGMHTLIRDSQTTKHDFVFYSDRLIRLVV-EHGLGHLPFTEKQVITPTGCVYSGVDFC- 326
Query: 158 PREPVMVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTR 217
+ + V ++R+G +M + K + + R+ + Q +Y LP+ I E
Sbjct: 327 --KRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLVY-EKLPNDISE-RH 382
Query: 218 VLVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTI 277
VL++DP+L TG + V AI+LL+ +GV I ++ ++AP + + KFP + + T I
Sbjct: 383 VLLLDPILGTGNSAVEAINLLISKGVPEGNIIFLNLISAPQGVHVVCKKFPRIKIVTSEI 442
Query: 278 DSEVDERGFIVPGLGDAGDRSFAT 301
D+ ++E ++PG+G+ GDR F T
Sbjct: 443 DNGLNEEFRVIPGMGEFGDRYFGT 466
>AT5G40870.1 | chr5:16375021-16378384 FORWARD LENGTH=487
Length = 486
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Query: 128 LIYEASRDWLPTITGEIQTPVAV--SSVEFIDPREPVMVVPILRAGLAMAENASSVLPAT 185
L+ E LP ++ TP + V+F + + V I+R+G +M +
Sbjct: 311 LVVEHGLGHLPFTEKQVVTPTGAVYTGVDFC---KKLCGVSIIRSGESMENALRACCKGI 367
Query: 186 KTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAAIDLLVERGVTS 245
K + + RD + + IY LP I E VL++DP+LATG + AI+LL+++GV
Sbjct: 368 KIGKILIHRDGDNGKQLIY-EKLPHDISE-RHVLLLDPVLATGNSANQAIELLIQKGVPE 425
Query: 246 KQIKVVSAVAAPPALQKLSNKFPGLHVYTGTIDSEVDERGFIVPGLGDAGDRSFAT 301
I ++ ++AP + + +FP L + T ID +++ ++PGLG+ GDR F T
Sbjct: 426 AHIIFLNLISAPEGIHCVCKRFPALKIVTSEIDQCLNQEFRVIPGLGEFGDRYFGT 481
>AT3G27190.1 | chr3:10039504-10042917 REVERSE LENGTH=484
Length = 483
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 7/176 (3%)
Query: 128 LIYEASRDWLPTITGEIQTPVA--VSSVEFIDPREPVMVVPILRAGLAMAENASSVLPAT 185
L+ E LP ++ TP S V+F + + V ++R+G +M +
Sbjct: 311 LVVEHGLGHLPFTEKQVVTPTGSVYSGVDFC---KKLCGVSVIRSGESMENALRACCKGI 367
Query: 186 KTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAAIDLLVERGVTS 245
K + + RD + IY LP I E VL++DP+L TG + AI+LL+++GV
Sbjct: 368 KIGKILIHRDGDNGMQLIY-EKLPSDISE-RHVLLLDPVLGTGNSANQAIELLIQKGVPE 425
Query: 246 KQIKVVSAVAAPPALQKLSNKFPGLHVYTGTIDSEVDERGFIVPGLGDAGDRSFAT 301
I ++ ++AP + + +FP L + T ID ++E ++PGLG+ GDR F T
Sbjct: 426 AHIIFLNLISAPEGIHCVCKRFPKLKIVTSEIDQCLNEEFRVIPGLGEFGDRYFGT 481
>AT3G27440.1 | chr3:10155555-10157931 FORWARD LENGTH=466
Length = 465
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 4/202 (1%)
Query: 100 IKHWVSVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVAVSSVEFIDPR 159
IK +++R+ T F L RL++ E LP +I TP S +D
Sbjct: 250 IKGMHTLIRDINTTKHDFVFYADRLIRLVV-EHGLGHLPFTEKQITTPTG-SVYTGVDFC 307
Query: 160 EPVMVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVL 219
+ + V ++R+G +M + K + + R+ + IY LP I V
Sbjct: 308 KRLCGVSVIRSGESMENALRACCNGIKIGKILIHRENNDGRQLIY-EKLPKDI-SSRHVF 365
Query: 220 VVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTIDS 279
++DP+LA+G + V AI LL+ +GV I ++ +AAP + L KFP L + T IDS
Sbjct: 366 LLDPVLASGYSAVKAITLLLSKGVPESHIIFLNLIAAPQGIHALCKKFPMLKIVTSEIDS 425
Query: 280 EVDERGFIVPGLGDAGDRSFAT 301
++E ++PGLG+ DR F T
Sbjct: 426 SLNEDSRVIPGLGEFADRYFGT 447
>AT1G55810.1 | chr1:20861273-20864003 FORWARD LENGTH=467
Length = 466
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 8/204 (3%)
Query: 100 IKHWVSVLRNEQTPCAIFKSAMAELGRLLIYEASRDWLPTITGEIQTPVA--VSSVEFID 157
I+ +++R+ +T F L RL++ E LP ++ TP S V+F
Sbjct: 266 IRGMHTLIRDSKTTKHDFIFYSDRLIRLVV-EHGLGHLPFTEKQVVTPTGSVYSGVDFC- 323
Query: 158 PREPVMVVPILRAGLAMAENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTR 217
+ + V ++R+G +M + K + + R+ + Q IY LP I E
Sbjct: 324 --KKLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIY-EKLPSDISE-RH 379
Query: 218 VLVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTI 277
VL++DP+L TG + V AI LL+ +GV I ++ ++AP + + KFP + + T I
Sbjct: 380 VLLLDPILGTGNSAVQAIRLLISKGVPESNIIFLNLISAPEGVNVVCKKFPRIKIVTSEI 439
Query: 278 DSEVDERGFIVPGLGDAGDRSFAT 301
+ +++ +VPG+G+ GDR F T
Sbjct: 440 ELGLNDEFRVVPGMGEFGDRYFGT 463
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,923,373
Number of extensions: 182090
Number of successful extensions: 467
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 7
Length of query: 301
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 203
Effective length of database: 8,419,801
Effective search space: 1709219603
Effective search space used: 1709219603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)