BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0453300 Os05g0453300|AK072286
         (368 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59050.1  | chr5:23839494-23842519 REVERSE LENGTH=313           63   2e-10
AT4G02830.1  | chr4:1262447-1263932 FORWARD LENGTH=185             63   3e-10
AT3G54000.1  | chr3:19996757-19998197 FORWARD LENGTH=353           58   9e-09

>AT5G59050.1 | chr5:23839494-23842519 REVERSE LENGTH=313
          Length = 312

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 49/76 (64%)

Query: 262 MRAVFLTPPGAKRERNGTGVFLPRPAGAPAEPKRKTGCSTVLVPARVVQALNLNLDDLGA 321
           ++AVF+   G++    GTGVFLPR  G   E ++K+GCSTV++PARVV+AL ++ D LG 
Sbjct: 190 VKAVFVDGSGSRTGSGGTGVFLPRGHGTVVESRKKSGCSTVIIPARVVEALKVHFDKLGV 249

Query: 322 QPRYPGGFVLDHDALI 337
              +       HDAL+
Sbjct: 250 PSTFSSDIPPFHDALL 265



>AT4G02830.1 | chr4:1262447-1263932 FORWARD LENGTH=185
          Length = 184

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 4/61 (6%)

Query: 262 MRAVFLTPPGAKRERNGTGVFLPRPAGAPAEPKRKTGCSTVLVPARVVQALNLNLDDLGA 321
           M+A FL  PG  R  +GTGVFLP  A  P  P +KT CS VL+P RVVQALNLN+ + G 
Sbjct: 83  MQAFFLVTPG--RTTSGTGVFLPATASHP--PTKKTACSPVLLPTRVVQALNLNIHNNGI 138

Query: 322 Q 322
            
Sbjct: 139 H 139



>AT3G54000.1 | chr3:19996757-19998197 FORWARD LENGTH=353
          Length = 352

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 14/87 (16%)

Query: 232 PVDMNPAAWPPLQKQQHAPAPXXXXXXXXXMRAVFLTPPGAKRERNGTGVFLPRPAG--A 289
           PVD++ +AW     ++              MRAVF+     KR   GTGVFLPR     +
Sbjct: 229 PVDLSSSAWSNQFPRRDV------------MRAVFIGDHTGKRGSTGTGVFLPRSVNHTS 276

Query: 290 PAEPKRKTGCSTVLVPARVVQALNLNL 316
             E + K   STVLVPAR+ Q LNLNL
Sbjct: 277 RTETREKPTISTVLVPARLAQVLNLNL 303



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,405,619
Number of extensions: 202714
Number of successful extensions: 424
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 3
Length of query: 368
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,364,969
Effective search space: 2241811692
Effective search space used: 2241811692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)