BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0452800 Os05g0452800|AK102413
(244 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05830.1 | chr5:1755910-1756825 FORWARD LENGTH=205 175 2e-44
AT5G01070.2 | chr5:25094-25799 REVERSE LENGTH=207 145 2e-35
AT2G37950.1 | chr2:15882536-15883665 REVERSE LENGTH=208 124 3e-29
AT5G59000.1 | chr5:23818768-23820018 FORWARD LENGTH=232 113 8e-26
AT2G34200.1 | chr2:14441105-14441882 FORWARD LENGTH=223 71 6e-13
AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495 62 3e-10
AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412 55 3e-08
AT3G09760.1 | chr3:2992975-2995451 REVERSE LENGTH=492 55 5e-08
AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467 54 6e-08
AT2G45530.1 | chr2:18756604-18757326 FORWARD LENGTH=241 52 2e-07
AT3G06330.1 | chr3:1917334-1919709 FORWARD LENGTH=427 50 9e-07
AT5G08750.3 | chr5:2852912-2854343 FORWARD LENGTH=371 47 7e-06
>AT5G05830.1 | chr5:1755910-1756825 FORWARD LENGTH=205
Length = 204
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/163 (57%), Positives = 112/163 (68%), Gaps = 8/163 (4%)
Query: 86 VEHHRRKSSCVSECSLDDVDLEAGLAEVIKGSPEKAERCCRICHLGLETAAAESGAGITL 145
V+ R+S+ S CS++ +DLE GL E + ++ER CRICH+ L+ A ESG I L
Sbjct: 43 VKDEERRSN-ASVCSVE-IDLELGLPEKVV-HLSQSERDCRICHMSLDAANLESGVPIEL 99
Query: 146 GCSCKGDLSYSHKQCAETWFKIRGNKICEICSSTACNVVGIGDSESVEQWNESN-----S 200
GCSCK DL+ +HK CAETWFKI+GNKICE+C S A NVVG + ES E NE+N +
Sbjct: 100 GCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVVGSVEVESEESRNEANGVENLT 159
Query: 201 TXXXXXXXXETQRFWQGHRFLNFLLACMVFAFVISWLFHFNVP 243
E + FWQGHRFLNFLLACMVFAFVISWLFHFNVP
Sbjct: 160 LRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFVISWLFHFNVP 202
>AT5G01070.2 | chr5:25094-25799 REVERSE LENGTH=207
Length = 206
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 87/137 (63%), Gaps = 10/137 (7%)
Query: 114 IKGSPEKAERCCRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKIC 173
I+GSPEK CRICHLGLE++ E G + LGCSCK DL Y HKQCA+TWFKI+GNK C
Sbjct: 70 IRGSPEKD---CRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTC 126
Query: 174 EICSSTACNVVGIGD-------SESVEQWNESNSTXXXXXXXXETQRFWQGHRFLNFLLA 226
EIC S A N + + +V+ N+ + +R +G+RFLNFLL
Sbjct: 127 EICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLT 186
Query: 227 CMVFAFVISWLFHFNVP 243
CMV AFVISW FHFN+P
Sbjct: 187 CMVCAFVISWFFHFNLP 203
>AT2G37950.1 | chr2:15882536-15883665 REVERSE LENGTH=208
Length = 207
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 79/128 (61%), Gaps = 8/128 (6%)
Query: 120 KAERCCRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICSST 179
E+ CRICHLG+ET+ G I LGCSCK DL+ +H+QCAETWFKI+G+K CEIC S
Sbjct: 79 PPEKDCRICHLGVETSG---GGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSV 135
Query: 180 ACNVVG----IGDS-ESVEQWNESNSTXXXXXXXXETQRFWQGHRFLNFLLACMVFAFVI 234
A NV G +G + E E N + + WQ R +N +LACMVF F I
Sbjct: 136 ARNVGGANEMVGSTMEERELRNGEETAAGEGGGATVVENRWQPQRVVNLVLACMVFGFFI 195
Query: 235 SWLFHFNV 242
SW+FHF+V
Sbjct: 196 SWIFHFHV 203
>AT5G59000.1 | chr5:23818768-23820018 FORWARD LENGTH=232
Length = 231
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 125 CRICHLGLETAAAES-------------------------------GAGITLGCSCKGDL 153
CRICHL LET G + LGCSCKGDL
Sbjct: 81 CRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKGDL 140
Query: 154 SYSHKQCAETWFKIRGNKICEICSSTACNVVGIGDSESVEQWNESNSTXXXXXXXXETQR 213
+H +CAETWFKI+GN CEIC + A NV G + S + E +
Sbjct: 141 GVAHSKCAETWFKIKGNMTCEICGAMALNVAGEQSNPESTASTHSQAAAGQSLTQTEPRG 200
Query: 214 FWQGHRFLNFLLACMVFAFVISWLFHFNV 242
W G +NFLLA MVFAFV+SWLFHF V
Sbjct: 201 IWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229
>AT2G34200.1 | chr2:14441105-14441882 FORWARD LENGTH=223
Length = 222
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 122 ERCCRICHLGLETAAAESGAG-------ITLGCSCKGDLSYSHKQCAETWFKIRGNKICE 174
ER CRICH G + + SG I +GC CK +L +H CAE WFK+RGN +CE
Sbjct: 99 ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158
Query: 175 ICSSTACNV 183
IC TA NV
Sbjct: 159 ICGCTAKNV 167
>AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495
Length = 494
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 122 ERCCRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICSSTAC 181
E CRIC + L E G + + CSCKG+L+ +HK CA WF I+GNK CE+C
Sbjct: 254 EAVCRICLVEL----CEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQEVK 309
Query: 182 NV 183
N+
Sbjct: 310 NL 311
>AT5G18760.1 | chr5:6258508-6260828 REVERSE LENGTH=412
Length = 411
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 125 CRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICSSTACNVV 184
CRIC E G + + CSCKGDL H+ CA WF +G +IC++C N+
Sbjct: 203 CRIC-----LDVCEEGNTLKMECSCKGDLRLVHEHCAIKWFSTKGTRICDVCRQEVRNLP 257
Query: 185 GIGDSESVEQWNESNSTXXXXXXXXETQRFWQGHRFLNFLLACMVFAF 232
I V N+ + E Q G F+ +L V F
Sbjct: 258 VIL--LRVPTINQLTNRRELTQQSSEPQSISVGQEFVVLVLISTVCYF 303
>AT3G09760.1 | chr3:2992975-2995451 REVERSE LENGTH=492
Length = 491
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 118 PEKAERCCRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICS 177
PE+ E CRIC + L E + C C+G+L+ +HK+C WF I+GN+ C++C
Sbjct: 260 PEE-EAVCRICLVEL----GEDSEAFKMECLCRGELALAHKECTIKWFTIKGNRTCDVCK 314
Query: 178 STACNV 183
N+
Sbjct: 315 QEVQNL 320
>AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467
Length = 466
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 118 PEKAERCCRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICS 177
PE+ E CRIC + +E E + C CKG+L+ +HK C WF I+GN C++C
Sbjct: 245 PEE-EAVCRICMVEME----EDEEAFKMECMCKGELALAHKTCTIKWFTIKGNITCDVCK 299
Query: 178 STACNV 183
N+
Sbjct: 300 QEVRNL 305
>AT2G45530.1 | chr2:18756604-18757326 FORWARD LENGTH=241
Length = 240
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 125 CRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICSSTACNVV 184
CR+C E E LGC C+G L+ +H+ C + WF+ +G+ CEIC A NV
Sbjct: 74 CRVCLQDKEEVLIE------LGCQCRGGLAKAHRSCIDAWFRTKGSNQCEICQVVAVNVT 127
Query: 185 GIGDSESVEQW 195
+ W
Sbjct: 128 PPETQPTTNYW 138
>AT3G06330.1 | chr3:1917334-1919709 FORWARD LENGTH=427
Length = 426
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 124 CCRICHLGLETAAAESGAGITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICSSTACNV 183
CRIC E G + + CSCKGDL H+ CA WF +G + C++C N+
Sbjct: 217 VCRIC-----LDVCEEGNTLKMECSCKGDLRLVHEACAMKWFSTKGTRTCDVCRQVVQNL 271
>AT5G08750.3 | chr5:2852912-2854343 FORWARD LENGTH=371
Length = 370
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 143 ITLGCSCKGDLSYSHKQCAETWFKIRGNKICEICSSTACNV 183
+ LGCSCK DL+ H CA WF G+ +CEIC T N+
Sbjct: 130 LELGCSCKNDLALVHYACALKWFVNHGSTVCEICGKTTENI 170
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.130 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,752,331
Number of extensions: 162891
Number of successful extensions: 350
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 18
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)