BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0450600 Os05g0450600|AK064266
(471 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G01170.1 | chr5:58315-60021 FORWARD LENGTH=569 122 5e-28
AT2G38070.1 | chr2:15928737-15930596 FORWARD LENGTH=620 111 8e-25
AT3G09070.1 | chr3:2768880-2770937 REVERSE LENGTH=686 109 4e-24
AT5G58930.1 | chr5:23794529-23796094 REVERSE LENGTH=522 66 5e-11
>AT5G01170.1 | chr5:58315-60021 FORWARD LENGTH=569
Length = 568
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 157/424 (37%), Gaps = 118/424 (27%)
Query: 35 KAMKDHIDLECSQAKKPQPKDLKEIAGSFWLAASVFSXXXXXXXXXXXXXXXXXXXXXXX 94
K MKD++DL SQ KKP KD AGSF+ AASVFS
Sbjct: 202 KPMKDYMDL-YSQTKKPSVKDF---AGSFFSAASVFSKKLQKWKQKQKVKKP-------- 249
Query: 95 XXXXXXXXXXXXXXFLRRSRLRGEACSEFAGGRRSCDTDPRFSLDAGRMSVD-------D 147
R G SE GRRS DTDPRFSLDAGR SVD D
Sbjct: 250 ----------------RNGVGGGRPQSEIGVGRRSSDTDPRFSLDAGRFSVDIGRISMDD 293
Query: 148 VGFSWDEPRASWDGYLFGAGTGIXXXXXXXXXXXXXXXXXXMEDSPAGIVERSDGQIPVE 207
+S DEPRASWDG+L G T +E++P + RSD QIP
Sbjct: 294 SRYSLDEPRASWDGHLIGRTTA-------ARVPLPPSMLSVVENAP---LNRSDMQIPSS 343
Query: 208 DDSQP---EPDPDADTPGGSVQTRDYYDTXXXXXXXXXXXXXXXXXXPSFEVTDAKPVLP 264
+P + DP PGGS QTRDYY E+ D K V
Sbjct: 344 PSIKPISGDSDPIIIIPGGSNQTRDYYTGPPSSRRRKSLDRSNSIRKIVTELEDVKSVSN 403
Query: 265 AAAAITSVKDSPLIGSSEFYHFQHAEDLLEHHRFSTSSLIEDFPMSLDAAFPGPDKKPRR 324
+ I DS + ++E Q+ DKK RR
Sbjct: 404 STTTI----DSNSMETAENKGNQNG-----------------------------DKKSRR 430
Query: 325 WRKAWSLWGLIHXXXX-------XXXXXXXXXXXXXFSEPWPELRV-RGCNARMQRCXXX 376
W K WS+ G I+ SE WPE+R G +M+R
Sbjct: 431 WGK-WSILGFIYRKGKDDEEEDRYSRSNSAGMVERSLSESWPEMRNGEGGGPKMRRS--- 486
Query: 377 XXXXXXXXXXXXXXXXXXXXYVDGNGNVVKRRREECALERNRSARYSPGHADNGMLRFYL 436
N N V R RN+S+RYS +NGMLRFYL
Sbjct: 487 ------------------------NSN-VSWRSSGGGSARNKSSRYSSKDGENGMLRFYL 521
Query: 437 TPMR 440
TPMR
Sbjct: 522 TPMR 525
>AT2G38070.1 | chr2:15928737-15930596 FORWARD LENGTH=620
Length = 619
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 149/414 (35%), Gaps = 72/414 (17%)
Query: 50 KPQPKDLKEIAGSFWLAASVFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 109
K +D KEIAGSFW AASVFS
Sbjct: 232 KKTNRDFKEIAGSFWSAASVFSKKLQKWRQKQKLKKHRTGNLGAGSSALPVEKAIG---- 287
Query: 110 LRRSRLRGEACSEFAGGRRSCDTDPRFS-------LDAGRMSVDDVGFSWDEPRASWDGY 162
R+ R +E+ GRRSCDTDPRFS LDAGR+SVDD +S++EPRASWDGY
Sbjct: 288 -RQLRDTQSEIAEYGYGRRSCDTDPRFSIDAGRFSLDAGRVSVDDPRYSFEEPRASWDGY 346
Query: 163 LFGAGTGIXXXXXXXXXXXXXXXXXXMEDSPA-GIVERSDGQIPVEDDSQ-PEPDPDADT 220
L G +EDSP V RSD IPVE Q E D
Sbjct: 347 LIGRAAA---------PMRMPSMLSVVEDSPVRNHVHRSDTHIPVEKSPQVSEAVIDEIV 397
Query: 221 PGGSVQTRDYYDTXXXXXXXXXXXXXXXXXXPSFEVTDAKPVLPAAAAITSVKDSPLIGS 280
PGGS QTR+YY S A+ + + + L
Sbjct: 398 PGGSAQTREYYLDSSSSRRRKSLDRSSSTRKLS------------ASVMAEIDELKLTQD 445
Query: 281 SEFYHFQHAEDLLEHH---RFSTSSLIEDFPMSLD---AAFPGPDKKPRRWRKAWSLWGL 334
E A+DL+ H R S+ ++ M + K+ ++ R +W+++GL
Sbjct: 446 RE------AKDLVSHSNSLRDDCCSVENNYEMGVRENVGTIECNKKRTKKSRWSWNIFGL 499
Query: 335 IHXXXXXXXXXXXXXXXX--XFSEPWPELRVRGCNARMQRCXXXXXXXXXXXXXXXXXXX 392
+H FS W G + +M R
Sbjct: 500 LHRKNGNKYEEEERRSGVDRTFSGSWNVEPRNGFDPKMIRSNSSVSWRSSGTTGGGLQRN 559
Query: 393 XXXXYVDGNGNVVKRRREECALERNRSARYSPGHADNGMLRFYLTPMRSASGRR 446
Y+ G V K A+NGML+FYLTP GRR
Sbjct: 560 SVDGYISGKKKVSK--------------------AENGMLKFYLTP---GKGRR 590
>AT3G09070.1 | chr3:2768880-2770937 REVERSE LENGTH=686
Length = 685
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 145/494 (29%), Positives = 189/494 (38%), Gaps = 107/494 (21%)
Query: 33 EAKAMKDHIDLECSQAKKPQPKDLKEIAGSFWLAASVFSXXXXXXXXXXXXXXXXXXXXX 92
E K +KD+IDL+ SQ KKP + SFW AASVFS
Sbjct: 244 ELKPIKDYIDLD-SQTKKPS------VRRSFWSAASVFSKKLQKWRQNQKMKKRRNGGDH 296
Query: 93 XXXXXXXXXXXXXXXXFLRRSRLRGEACSEFAGGRRSCDTDPRFSLDAGRMSVD------ 146
R+ R +++ GRRSCDTDPRFSLDAGR S+D
Sbjct: 297 RPGSARLPVEKP----IGRQLRDTQSEIADYGYGRRSCDTDPRFSLDAGRFSLDAGRFSV 352
Query: 147 DVG--------FSWDEPRASWDGYLFGAGTGIXXXXXXXXXXXXXXXXXXMEDSPAGI-- 196
D+G +S+DEPRASWDG L G +ED+P +
Sbjct: 353 DIGRISLDDPRYSFDEPRASWDGSLIGR----TMFPPAARAPPPPSMLSVVEDAPPPVHR 408
Query: 197 -VERSDGQI---------PVEDDSQPEPDPDADTPGGSVQTRDYY-DTXXXXXXXXXXXX 245
V R+D Q PV + + DP PGGS+QTRDYY D+
Sbjct: 409 HVTRADMQFPVEEPAPPPPVVNQTNGVSDP-VIIPGGSIQTRDYYTDSSSRRRKSLDRSS 467
Query: 246 XXXXXXPSFEVTDA-KPVLPAAAAITSVKDSPLIGSSEFYHFQHAEDLLEHHRFSTSSLI 304
+ V D +P L ++AI+ S + + Y + A++ S
Sbjct: 468 SSMRKTAAAVVADMDEPKLSVSSAISIDAYSGSLRDNNNYAVETADN---------GSFR 518
Query: 305 EDFPMSLDAAFPGPD--KKPRRWRKAWSLWGLIHXXXXXXXXXXXXXXXXXF-------- 354
E M D D KK RRW K WS+ GLI+ +
Sbjct: 519 EPAMMIGDRKVNSNDNNKKSRRWGK-WSILGLIYRKSVNKYEEEEEEEEDRYRRLNGGMV 577
Query: 355 ----SEPWPELRVRGCNARMQRCXXXXXXXXXXXXXXXXXXXXXXXYVDGNGNVVKR--- 407
SE WPELR G R V N NV R
Sbjct: 578 ERSLSESWPELRNGGGGGGGPRM------------------------VRSNSNVSWRSSG 613
Query: 408 ----RREECALERNRSARYSPGHADNGMLRFYLTPMRSASGRRAPGLPAKGGRQL----- 458
R+ RN+S+RYSP + +NGML+FYL M+++ RR G GG
Sbjct: 614 GGSARKVNGLDRRNKSSRYSPKNGENGMLKFYLPHMKAS--RRMSGTGGAGGGGGGGWAN 671
Query: 459 -RSQSFARSMLRLY 471
S ARS++RLY
Sbjct: 672 SHGHSIARSVMRLY 685
>AT5G58930.1 | chr5:23794529-23796094 REVERSE LENGTH=522
Length = 521
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 89/231 (38%), Gaps = 64/231 (27%)
Query: 126 GRRSCDTDPRFSLDAGRMSVDDVGFSWDEPRASWDGYLFGAGTGIXXXXXXXXXXXXXXX 185
GRRSCD DPR SLDAGR+ S+DEPRASWDG L G
Sbjct: 177 GRRSCDVDPRLSLDAGRV-------SFDEPRASWDGCLIGK--------TYPKLIPLSSV 221
Query: 186 XXXMEDSPAGIVERSDGQIPVEDDSQPEPDPDADTPGGSVQTRDYYDTXXXXXXXXXXXX 245
++ SP E+ G+ VE+D + + PGG+ QTRDYY
Sbjct: 222 TEDVKASP----EKITGE-KVEED-------EKNNPGGTAQTRDYY-----LDSRRRRSF 264
Query: 246 XXXXXXPSFEVTDAKPVLPAAAAITSVKDSPLIGSSEFYHFQHAEDLLEHHRFSTSS--- 302
EV + K AI++ K SP E H LL R S
Sbjct: 265 DRSSRHGLLEVDELK-------AISNAKVSP-----ETVGLFHGAKLLVTERELRDSNWY 312
Query: 303 LIEDF-PMSLDAAFPGP----------------DKKPRRWRKAWSLWGLIH 336
I+++ P SL+ G K + W K W+ WGLI
Sbjct: 313 SIKNYKPESLELGSKGVGCVAAGEVKKQDGFGLKKSGKNWSKGWNFWGLIQ 363
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,697,572
Number of extensions: 312585
Number of successful extensions: 693
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 5
Length of query: 471
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 369
Effective length of database: 8,310,137
Effective search space: 3066440553
Effective search space used: 3066440553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)