BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0446900 Os05g0446900|AK101748
         (373 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01260.2  | chr5:105367-107045 FORWARD LENGTH=386              128   5e-30
AT5G26570.1  | chr5:9261580-9267526 FORWARD LENGTH=1197            60   2e-09

>AT5G01260.2 | chr5:105367-107045 FORWARD LENGTH=386
          Length = 385

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 86/125 (68%), Gaps = 7/125 (5%)

Query: 97  GKTVRVRFVLKRECTFGQSFHLVGDDPALG-LWDPSKAVPLDWSEGHDWTVEKDLPANKL 155
            KTVRVRF L++EC FG+ F +VGDDP  G LWDP  A+PL+WS+G+ WTV+ DLP  +L
Sbjct: 84  NKTVRVRFQLRKECVFGEHFFIVGDDPVFGGLWDPETALPLNWSDGNVWTVDLDLPVGRL 143

Query: 156 IEYKFVLQDLSGKLHWQNGRNRSVQTGETANILVVYEDWGNANSQTVEEEGKV------S 209
           +E+K +L+  +G++ WQ G NR+++T ET   + + EDW NA+ Q + EE  V      S
Sbjct: 144 VEFKLLLKAQTGEILWQPGPNRALETWETNKTIRICEDWDNADLQMMIEEDFVPYTNISS 203

Query: 210 IGMEE 214
           IG E+
Sbjct: 204 IGSED 208



>AT5G26570.1 | chr5:9261580-9267526 FORWARD LENGTH=1197
          Length = 1196

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 97  GKTVRVRFVLKRECTFGQSFHLVGDDPALGLWDPSKAVPLDWSEGHDWTVEKDLPANKLI 156
           G  VR+   L  +  FG    + G    +G W   K  PL+WSE + W  E +L   +++
Sbjct: 71  GTKVRLNVRLDHQVNFGDHVAMFGSAKEIGSW--KKKSPLNWSE-NGWVCELELDGGQVL 127

Query: 157 EYKFVLQDLSGKLHWQNGRNRSVQTGETANILVV 190
           EYKFV+    G L W++G NR ++   + N  VV
Sbjct: 128 EYKFVIVKNDGSLSWESGDNRVLKVPNSGNFSVV 161



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,511,230
Number of extensions: 316710
Number of successful extensions: 773
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,364,969
Effective search space: 2283636537
Effective search space used: 2283636537
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)