BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0446300 Os05g0446300|AK066998
         (145 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21110.1  | chr4:11267673-11268774 FORWARD LENGTH=146          271   1e-73

>AT4G21110.1 | chr4:11267673-11268774 FORWARD LENGTH=146
          Length = 145

 Score =  271 bits (692), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 124/145 (85%), Positives = 139/145 (95%)

Query: 1   MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
           MPK+KT+RVKYPEGWELIEPTLR+L+AKMREAE D HDGKRKCE LWPIF++SHQ+SRY+
Sbjct: 1   MPKVKTNRVKYPEGWELIEPTLRELDAKMREAETDSHDGKRKCETLWPIFKVSHQRSRYV 60

Query: 61  YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNFATTCVCR 120
           YDLYYRR+EISKELYEFCLDQG+AD++LIAKWKK GYERLCCLRCIQ RDHN+ TTCVCR
Sbjct: 61  YDLYYRREEISKELYEFCLDQGYADRSLIAKWKKSGYERLCCLRCIQPRDHNYGTTCVCR 120

Query: 121 VPKHLREEKVIECVHCGCRGCASGD 145
           VPKHLREEKV+ECVHCGC+GCASGD
Sbjct: 121 VPKHLREEKVVECVHCGCQGCASGD 145



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,675,984
Number of extensions: 152752
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)