BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0440300 Os05g0440300|AK068179
(395 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08460.1 | chr1:2672527-2674469 FORWARD LENGTH=378 410 e-115
AT5G61070.1 | chr5:24571297-24574372 REVERSE LENGTH=683 137 7e-33
AT4G33470.1 | chr4:16102774-16105439 REVERSE LENGTH=424 133 2e-31
AT5G61060.2 | chr5:24567137-24570917 REVERSE LENGTH=665 132 5e-31
AT3G18520.2 | chr3:6361605-6365399 FORWARD LENGTH=565 129 4e-30
AT4G38130.1 | chr4:17896493-17899057 REVERSE LENGTH=502 99 3e-21
AT5G63110.1 | chr5:25315834-25318227 REVERSE LENGTH=472 98 6e-21
AT3G44680.1 | chr3:16226769-16229752 REVERSE LENGTH=427 98 7e-21
AT5G35600.1 | chr5:13770121-13771712 REVERSE LENGTH=410 87 2e-17
>AT1G08460.1 | chr1:2672527-2674469 FORWARD LENGTH=378
Length = 377
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/292 (65%), Positives = 234/292 (80%), Gaps = 2/292 (0%)
Query: 103 EELVQADSAGANNNKICECTFLNPGSWDXXXXXXXXXXXXMKHILDGHAKIAYALVRPPG 162
E+LV+AD +G +I TF++PGSW+ M+HILD H KIAYALVRPPG
Sbjct: 85 EKLVEADKSG-ERCEIAAGTFMSPGSWEAALLAAGTTLSAMQHILDCHGKIAYALVRPPG 143
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGR-RRVAVVDIDVHYGNGTAEGFYHTDSVLTIS 221
HH+QP +ADGYCFLNNA LAVKLAL+SG RVAV+DIDVHYGNGTAEGFY +D VLT+S
Sbjct: 144 HHSQPTQADGYCFLNNAALAVKLALNSGSCSRVAVIDIDVHYGNGTAEGFYTSDKVLTVS 203
Query: 222 LHMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFR 281
LHM HGSWG SHPQ G +DE GE GLGYNLN+PLPNG+GD GYEYAMNELVVPA+ +F
Sbjct: 204 LHMNHGSWGSSHPQKGSIDELGEDVGLGYNLNVPLPNGTGDRGYEYAMNELVVPAVRRFG 263
Query: 282 PELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYS 341
P+++V VVGQDSSAFDPNGRQ LTM+GYR+IGQIMRG+A++HS+G++L+VQEGGYH+TY+
Sbjct: 264 PDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQIMRGVAEEHSHGRLLMVQEGGYHVTYA 323
Query: 342 AYCLHATLEGVLNLQAPLLDDPLGFYPDDEKYTMQAVDIIKKCWKESIPFLK 393
AYCLHA LEGVL + P L DP+ +YP++E + AV+ IK E +PFL+
Sbjct: 324 AYCLHAMLEGVLKIPEPHLSDPIAYYPEEEANAVAAVESIKTYHTEFVPFLR 375
>AT5G61070.1 | chr5:24571297-24574372 REVERSE LENGTH=683
Length = 682
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 106 VQADSAGANNNKIC---ECTFLNPGSWDXXXXXXXXXXXXMKHILDGHAKIAYALVRPPG 162
+ + NKI + +LN GS + + + +G +A+VRPPG
Sbjct: 130 ISTKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEGELDCGFAIVRPPG 189
Query: 163 HHAQPDRADGYCFLNNAGLAVKLAL----DSGRRRVAVVDIDVHYGNGTAEGFYHTDSVL 218
HHA+ D A G+C NN +A L D +++ +VD D+H+GNGT + F+ VL
Sbjct: 190 HHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVL 249
Query: 219 TISLHM-KHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGS-GDAGYEYAMNELVVPA 276
S+H HGS+ P G + GEG G G+N+N+P G GDA Y N +++P
Sbjct: 250 IFSVHRHDHGSFYP-FGDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPV 308
Query: 277 IEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGY 336
++F+P++++ G D++ DP G C+T GY +M + ++G+I++ EGGY
Sbjct: 309 TKEFKPDIILLSAGFDAAIGDPLGGCCVTPYGY----SVMLKKLMEFAHGKIVLALEGGY 364
Query: 337 HI----TYSAYCLHATLE 350
++ S C+ LE
Sbjct: 365 NLESLGKSSLACVQVLLE 382
>AT4G33470.1 | chr4:16102774-16105439 REVERSE LENGTH=424
Length = 423
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 8/233 (3%)
Query: 153 IAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDS-GRRRVAVVDIDVHYGNGTAEGF 211
I +AL+RPPGHHA P G+C N +A + A + G +R+ ++D DVH+GNGT + F
Sbjct: 191 IGFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAF 250
Query: 212 YHTDSVLTISLHMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNE 271
+ +S H S+P +G + + G+G+G G LN+PLP GSGD E
Sbjct: 251 TEDPDIFFLSTHQDG-----SYPGTGKISDIGKGKGEGTTLNLPLPGGSGDIAMRTVFEE 305
Query: 272 LVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIV 331
++VP ++F+P++++ G D+ DP T Y + + ++ +A + G+ +
Sbjct: 306 IIVPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFF 365
Query: 332 QEGGYHITYSAYCLHATLEGVL--NLQAPLLDDPLGFYPDDEKYTMQAVDIIK 382
EGGY++ + + + +L + A D+P Y + + A+ K
Sbjct: 366 LEGGYNLESLSSSVADSFRALLGEDSLASEFDNPAYLYDEPMRKVRDAIQRAK 418
>AT5G61060.2 | chr5:24567137-24570917 REVERSE LENGTH=665
Length = 664
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 129/243 (53%), Gaps = 21/243 (8%)
Query: 123 FLNPGSWDXXXXXXXXXXXXMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLA 182
+LN GS + + + +G +A+VRPPGHHA+ D A G+C NN +A
Sbjct: 117 YLNGGSSEAAYLAAGSVVKLAEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVA 176
Query: 183 VKLAL----DSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISLHM-KHGSWGPSHPQSG 237
L D G +++ +VD DVH+GNGT + F+ VL S+H ++G + P+ G
Sbjct: 177 ASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPAG-DDG 235
Query: 238 LVDETGEGRGLGYNLNIPLPNG-SGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAF 296
+ GEG G G+N+N+P G GDA Y A + +++P +F P+++ G D++
Sbjct: 236 DYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAIN 295
Query: 297 DPNGRQCLTMDGY----RKIG-QIMRGMADQHSNGQILIVQEGGYHI----TYSAYCLHA 347
DP G C+T GY +K+G ++M + + G+I++ EGGY++ S C+
Sbjct: 296 DPLGGCCVTPYGYSVMLKKVGVELM-----EFAQGKIVLALEGGYNLDSIAKSSLACVQV 350
Query: 348 TLE 350
LE
Sbjct: 351 LLE 353
>AT3G18520.2 | chr3:6361605-6365399 FORWARD LENGTH=565
Length = 564
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 146 ILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGN 205
I G K +ALVRPPGHHA A G+C NNA +A +A +G ++V +VD DVH+GN
Sbjct: 259 IFTGRVKNGFALVRPPGHHAGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGN 318
Query: 206 GTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLP-NGSGDAG 264
GT E F SVL ISLH G G +P +G DE G G GY +N+P G GD
Sbjct: 319 GTQEIFEQNKSVLYISLHRHEG--GNFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKD 376
Query: 265 YEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHS 324
Y +A +V+P F P+ ++ G D++ DP G +T GY ++ Q++ +
Sbjct: 377 YIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPLGCCDVTPAGYSRMTQMLGDLC---- 432
Query: 325 NGQILIVQEGGYHI 338
G++L++ EGGY++
Sbjct: 433 GGKMLVILEGGYNL 446
>AT4G38130.1 | chr4:17896493-17899057 REVERSE LENGTH=502
Length = 501
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 5/157 (3%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA+ A G+C++N+ LA+ L L RV VDID+H+G+G E FY TD V+T+S
Sbjct: 148 HHAKKCEASGFCYVNDIVLAI-LELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSF 206
Query: 223 HMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRP 282
H +G P +G + + G G G Y+LN+PL +G D Y ++ +E FRP
Sbjct: 207 H----KFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDESYHLLFKPIMGKVMEIFRP 262
Query: 283 ELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGM 319
+V G DS + D G L++ G+ + + MR
Sbjct: 263 GAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF 299
>AT5G63110.1 | chr5:25315834-25318227 REVERSE LENGTH=472
Length = 471
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA+ A G+C++N+ L + L L +RV +DIDVH+G+G E FY TD V+T+S
Sbjct: 152 HHAKKSEASGFCYVNDIVLGI-LELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSF 210
Query: 223 HMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRP 282
H +G P +G + + G +G Y LN+PL +G D + L+ +E ++P
Sbjct: 211 H----KFGDFFPGTGHIRDVGAEKGKYYALNVPLNDGMDDESFRSLFRPLIQKVMEVYQP 266
Query: 283 ELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYSA 342
E +V G DS + D G L++ G+ + +R N ++++ GGY I A
Sbjct: 267 EAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSY-----NVPLMVLGGGGYTIRNVA 321
Query: 343 YC 344
C
Sbjct: 322 RC 323
>AT3G44680.1 | chr3:16226769-16229752 REVERSE LENGTH=427
Length = 426
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HHA+ A G+C++N+ L + L L RV +DIDVH+G+G E FY TD V+T+S
Sbjct: 136 HHAKKCDASGFCYINDLVLGI-LELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSF 194
Query: 223 HMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRP 282
H + P +G V E GE G Y +N+PL +G D+ + ++ +E ++P
Sbjct: 195 HKFGDKFFPG---TGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRTIISKVVEIYQP 251
Query: 283 ELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITYSA 342
+V G DS A D G L++DG+ + + ++ N +L+ GGY A
Sbjct: 252 GAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKF-----NLPLLVTGGGGYTKENVA 306
Query: 343 YCLHATLEGVLNLQAP 358
C +L+ + P
Sbjct: 307 RCWTVETGILLDTELP 322
>AT5G35600.1 | chr5:13770121-13771712 REVERSE LENGTH=410
Length = 409
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 22/186 (11%)
Query: 163 HHAQPDRADGYCFLNNAGLAVKLALDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISL 222
HH + D+A G+ ++N+ LA+ L L +RV ++I +G+ E F TD V+T+S
Sbjct: 147 HHVKKDKASGFGYVNDVVLAI-LELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVSF 205
Query: 223 HMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVP----AIE 278
H K G +G + + GEG+G Y+LN PL +G D +++ L +P A+E
Sbjct: 206 H-KVG-------DTGDISDYGEGKGQYYSLNAPLKDGLDD----FSLRGLFIPVIHRAME 253
Query: 279 KFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHI 338
+ PE++V G DS A DP G L++ G+ Q +R N ++I+ GGY +
Sbjct: 254 IYEPEVIVLQCGADSLAGDPFGTFNLSIKGHGDCLQYVRSF-----NVPLMILGGGGYTL 308
Query: 339 TYSAYC 344
A C
Sbjct: 309 PNVARC 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,120,735
Number of extensions: 399976
Number of successful extensions: 704
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 9
Length of query: 395
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,337,553
Effective search space: 2451240582
Effective search space used: 2451240582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)