BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0438600 Os05g0438600|AY035554
(141 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43670.1 | chr1:16468184-16470347 FORWARD LENGTH=342 248 7e-67
AT3G54050.1 | chr3:20016951-20018527 FORWARD LENGTH=418 152 8e-38
AT5G64380.1 | chr5:25741342-25743024 FORWARD LENGTH=405 119 5e-28
>AT1G43670.1 | chr1:16468184-16470347 FORWARD LENGTH=342
Length = 341
Score = 248 bits (633), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 114/141 (80%), Positives = 127/141 (90%)
Query: 1 IFGIYMIKDKDNVTLDDVLQPGTDMLAAGYCMYGSSCTLVLSTGNGVNGFTLDPSLGEFI 60
IFGIY + D T DVL+PG +M+AAGYCMYGSSC LVLSTG GV+GFTLDPSLGEFI
Sbjct: 138 IFGIYTLDHTDEPTTADVLKPGNEMVAAGYCMYGSSCMLVLSTGTGVHGFTLDPSLGEFI 197
Query: 61 LTHPNIKIPNRGKIYSVNEGNAKNWDAPTAKFVEKCKFPQDGSPSKSLRYIGSMVADVHR 120
LTHP+IKIPN+G IYSVNEGNA+NWD PT K+VEKCKFP+DGSP+KSLRY+GSMVADVHR
Sbjct: 198 LTHPDIKIPNKGNIYSVNEGNAQNWDGPTTKYVEKCKFPKDGSPAKSLRYVGSMVADVHR 257
Query: 121 TLLYGGIFLYPADQKSPNGKL 141
TLLYGGIFLYPAD+KSPNGKL
Sbjct: 258 TLLYGGIFLYPADKKSPNGKL 278
>AT3G54050.1 | chr3:20016951-20018527 FORWARD LENGTH=418
Length = 417
Score = 152 bits (383), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 98/156 (62%), Gaps = 15/156 (9%)
Query: 1 IFGIY------MIKDKDNVT---------LDDVLQPGTDMLAAGYCMYGSSCTLVLSTGN 45
IFGIY ++ D D+++ + +V QPG ++LAAGYCMY SS VL+ G
Sbjct: 205 IFGIYSPNDECIVDDSDDISALGSEEQRCIVNVCQPGNNLLAAGYCMYSSSVIFVLTLGK 264
Query: 46 GVNGFTLDPSLGEFILTHPNIKIPNRGKIYSVNEGNAKNWDAPTAKFVEKCKFPQDGSPS 105
GV FTLDP GEF+LT NI+IP G+IYS NEGN + WD K+++ K P
Sbjct: 265 GVFSFTLDPMYGEFVLTQENIEIPKAGRIYSFNEGNYQMWDDKLKKYIDDLKDPGPTGKP 324
Query: 106 KSLRYIGSMVADVHRTLLYGGIFLYPADQKSPNGKL 141
S RYIGS+V D HRTLLYGGI+ YP D KS NGKL
Sbjct: 325 YSARYIGSLVGDFHRTLLYGGIYGYPRDAKSKNGKL 360
>AT5G64380.1 | chr5:25741342-25743024 FORWARD LENGTH=405
Length = 404
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%), Gaps = 7/141 (4%)
Query: 1 IFGIY-MIKDKDNVTLDD-----VLQPGTDMLAAGYCMYGSSCTLVLSTGNGVNGFTLDP 54
IFGIY + + D++ +++ LQ G+ ++A+GY +Y S+ ++ G+G + FTLD
Sbjct: 195 IFGIYNRLVELDHLPVEEKAELNSLQRGSRLVASGYVLYSSATIFCVTLGSGTHAFTLDH 254
Query: 55 SLGEFILTHPNIKIPNRGKIYSVNEGNAKNWDAPTAKFVEKCKFPQDGSPSK-SLRYIGS 113
S GEF+LTH NIKIP RG+IYSVN+ +W K+++ + + +P K S RYI S
Sbjct: 255 STGEFVLTHQNIKIPTRGQIYSVNDARYFDWPEGLRKYIDTVRQGKGQNPKKYSARYICS 314
Query: 114 MVADVHRTLLYGGIFLYPADQ 134
+VAD+HRTLLYGG+ + P D
Sbjct: 315 LVADLHRTLLYGGVAMNPRDH 335
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,532,414
Number of extensions: 149425
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 3
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)