BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0438500 Os05g0438500|AK059951
(224 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217 385 e-107
AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213 373 e-104
AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217 363 e-101
AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217 354 2e-98
AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219 325 2e-89
AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301 80 1e-15
>AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217
Length = 216
Score = 385 bits (989), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/212 (85%), Positives = 198/212 (93%)
Query: 13 ADEVVEPYQQTPRPGPKLNERILSSLSRRSVAAHPWHDLEIGPDAPAVFNVVVEITKGSK 72
A E + Q+PRP PKLNERILS+LSRRSVAAHPWHDLEIGP+AP VFNVVVEITKGSK
Sbjct: 5 AYEETQESSQSPRPVPKLNERILSTLSRRSVAAHPWHDLEIGPEAPLVFNVVVEITKGSK 64
Query: 73 VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVLPGSFLRA 132
VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDP+DVLVLMQEPVLPG FLRA
Sbjct: 65 VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQEPVLPGCFLRA 124
Query: 133 RAIGLMPMIDQGEKDDKIIAVCADDPEYRHFNNLSELSPHRLQEIRRFFEDYKKNENKEV 192
RAIGLMPMIDQGEKDDKIIAVCADDPEY+HF ++ +L+PHRLQEIRRFFEDYKKNENK+V
Sbjct: 125 RAIGLMPMIDQGEKDDKIIAVCADDPEYKHFTDIKQLAPHRLQEIRRFFEDYKKNENKKV 184
Query: 193 AVNDFLPAPTAREAIQYSMDLYAQYILQSLKR 224
AVNDFLP+ +A EAIQYSMDLYA+YIL +L+R
Sbjct: 185 AVNDFLPSESAHEAIQYSMDLYAEYILHTLRR 216
>AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213
Length = 212
Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/204 (85%), Positives = 190/204 (93%)
Query: 21 QQTPRPGPKLNERILSSLSRRSVAAHPWHDLEIGPDAPAVFNVVVEITKGSKVKYELDKK 80
Q+ RP P+LNERILSSLSRRSVAAHPWHDLEIGP AP +FNVVVEITKGSKVKYELDKK
Sbjct: 9 QRLQRPAPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGSKVKYELDKK 68
Query: 81 TGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVLPGSFLRARAIGLMPM 140
TGLIKVDRILYSSVVYPHNYGF+PRTLCEDNDP+DVLV+MQEPVLPG FLRARAIGLMPM
Sbjct: 69 TGLIKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPM 128
Query: 141 IDQGEKDDKIIAVCADDPEYRHFNNLSELSPHRLQEIRRFFEDYKKNENKEVAVNDFLPA 200
IDQGEKDDKIIAVC DDPEY+H+ ++ EL PHRL EIRRFFEDYKKNENKEVAVNDFLP+
Sbjct: 129 IDQGEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDYKKNENKEVAVNDFLPS 188
Query: 201 PTAREAIQYSMDLYAQYILQSLKR 224
+A EAIQYSMDLYA+YIL +L+R
Sbjct: 189 ESAVEAIQYSMDLYAEYILHTLRR 212
>AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217
Length = 216
Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/215 (80%), Positives = 191/215 (88%)
Query: 10 HGAADEVVEPYQQTPRPGPKLNERILSSLSRRSVAAHPWHDLEIGPDAPAVFNVVVEITK 69
+G + +P ++ P P+LNERILSSLS+RSVAAHPWHDLEIGP AP +FNVV+EI+K
Sbjct: 2 NGEEVKTSQPQKKLQNPTPRLNERILSSLSKRSVAAHPWHDLEIGPGAPVIFNVVIEISK 61
Query: 70 GSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVLPGSF 129
GSKVKYELDKKTGLIKVDRILYSSVVYPHNYGF+PRTLCEDNDP+DVLV+MQEPVLPG F
Sbjct: 62 GSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCF 121
Query: 130 LRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHFNNLSELSPHRLQEIRRFFEDYKKNEN 189
LRARAIGLMPMIDQGEKDDKIIAVC DDPEY+H N++EL PHRL EIRRFFEDYKKNEN
Sbjct: 122 LRARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHITNINELPPHRLSEIRRFFEDYKKNEN 181
Query: 190 KEVAVNDFLPAPTAREAIQYSMDLYAQYILQSLKR 224
KEVAVNDFL A EAIQYSMDLYA+YIL +L+R
Sbjct: 182 KEVAVNDFLQPGPAIEAIQYSMDLYAEYILHTLRR 216
>AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217
Length = 216
Score = 354 bits (909), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 164/197 (83%), Positives = 184/197 (93%)
Query: 28 PKLNERILSSLSRRSVAAHPWHDLEIGPDAPAVFNVVVEITKGSKVKYELDKKTGLIKVD 87
P LNERILSS+S RSVAAHPWHDLEIGP+AP +FN VVEI KGSKVKYELDK TGLIKVD
Sbjct: 20 PTLNERILSSMSHRSVAAHPWHDLEIGPEAPIIFNCVVEIGKGSKVKYELDKTTGLIKVD 79
Query: 88 RILYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGEKD 147
RILYSSVVYPHNYGFIPRTLCED+DP+DVLV+MQEPV+PG FLRA+AIGLMPMIDQGEKD
Sbjct: 80 RILYSSVVYPHNYGFIPRTLCEDSDPIDVLVIMQEPVIPGCFLRAKAIGLMPMIDQGEKD 139
Query: 148 DKIIAVCADDPEYRHFNNLSELSPHRLQEIRRFFEDYKKNENKEVAVNDFLPAPTAREAI 207
DKIIAVCADDPEYRH+N++SEL PHR+ EIRRFFEDYKKNENKEVAVNDFLPA A +A+
Sbjct: 140 DKIIAVCADDPEYRHYNDISELPPHRMAEIRRFFEDYKKNENKEVAVNDFLPATAAYDAV 199
Query: 208 QYSMDLYAQYILQSLKR 224
Q+SMDLYA Y++++L+R
Sbjct: 200 QHSMDLYADYVVENLRR 216
>AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219
Length = 218
Score = 325 bits (832), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 153/199 (76%), Positives = 171/199 (85%)
Query: 26 PGPKLNERILSSLSRRSVAAHPWHDLEIGPDAPAVFNVVVEITKGSKVKYELDKKTGLIK 85
P LNER ++ + RS AAHPWHDLEIGP+AP VFN VVEI+KG KVKYELDK +GLIK
Sbjct: 20 PNVTLNERNFAAFTHRSAAAHPWHDLEIGPEAPTVFNCVVEISKGGKVKYELDKNSGLIK 79
Query: 86 VDRILYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGE 145
VDR+LYSS+VYPHNYGFIPRT+CED+DPMDVLVLMQEPVL GSFLRARAIGLMPMIDQGE
Sbjct: 80 VDRVLYSSIVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLTGSFLRARAIGLMPMIDQGE 139
Query: 146 KDDKIIAVCADDPEYRHFNNLSELSPHRLQEIRRFFEDYKKNENKEVAVNDFLPAPTARE 205
KDDKIIAVCADDPE+RH+ ++ EL PHRL EIRRFFEDYKKNENK+V V FLPA A +
Sbjct: 140 KDDKIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFEDYKKNENKKVDVEAFLPAQAAID 199
Query: 206 AIQYSMDLYAQYILQSLKR 224
AI+ SMDLYA YI L+R
Sbjct: 200 AIKDSMDLYAAYIKAGLQR 218
>AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301
Length = 300
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 24/191 (12%)
Query: 22 QTPRPGPKLNERILSSLSRRSVAAHPWHDLEIGPDAPAVFNVVVEITKGSKVKYEL--DK 79
Q P L+ R+ L PWHD+ + VFN +VEI K SK K E+ D+
Sbjct: 68 QEEGPAESLDYRVFF-LDGSGKKVSPWHDIPLTL-GDGVFNFIVEIPKESKAKMEVATDE 125
Query: 80 KTGLIKVDRILYSSVVYPHN----YGFIPRTL------------C-EDNDPMDVLVLMQE 122
IK D YP+N YG +P+T C DNDP+DV+ + +
Sbjct: 126 DFTPIKQDTKKGKLRYYPYNINWNYGLLPQTWEDPSHANSEVEGCFGDNDPVDVVEIGET 185
Query: 123 PVLPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHFNNLSELSPH---RLQEIRR 179
G L+ + + + MID+GE D KI+A+ DDP+ N++ ++ H L IR
Sbjct: 186 QRKIGDILKIKPLAALAMIDEGELDWKIVAISLDDPKAHLVNDVEDVEKHFPGTLTAIRD 245
Query: 180 FFEDYKKNENK 190
+F DYK + K
Sbjct: 246 WFRDYKIPDGK 256
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,177,174
Number of extensions: 221373
Number of successful extensions: 514
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 6
Length of query: 224
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 129
Effective length of database: 8,502,049
Effective search space: 1096764321
Effective search space used: 1096764321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)