BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0437700 Os05g0437700|AY224507
(179 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44080.1 | chr5:17738787-17739734 REVERSE LENGTH=316 68 2e-12
AT1G03970.1 | chr1:1018237-1019049 FORWARD LENGTH=271 62 2e-10
AT2G36270.1 | chr2:15204980-15206571 REVERSE LENGTH=443 47 5e-06
>AT5G44080.1 | chr5:17738787-17739734 REVERSE LENGTH=316
Length = 315
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 74/170 (43%), Gaps = 28/170 (16%)
Query: 38 MTLEDFLAR---EDDPRATAVEGNMVVGFPNVTEGVGTAXXXXXXXXXXXXXK------- 87
MTLEDFLA+ ED+ TA ++ V P G + +
Sbjct: 146 MTLEDFLAKAAVEDETAVTASAEDLDVKIPVTNYGFDHSAPPHNPFQMIDKVEGSIVAFG 205
Query: 88 ---------------RTLMDPADRAAMQRQKRMIKNRESAARSRERKQAYIXXXXXXXXX 132
R +++P D+AA QRQ+RMIKNRESAARSRERKQAY
Sbjct: 206 NGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAK 265
Query: 133 XXXXXXXXXXXXXXKNQKRLKEIKEQAVAVVIRKKTQD---LRRTNSMEW 179
K ++R +++ E + VV + K Q LRR S+EW
Sbjct: 266 LEEENELLSKEIEDKRKERYQKLMEFVIPVVEKPKQQPPRFLRRIRSLEW 315
>AT1G03970.1 | chr1:1018237-1019049 FORWARD LENGTH=271
Length = 270
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 72/165 (43%), Gaps = 30/165 (18%)
Query: 38 MTLEDFLAREDDPRATAVE-------------GNMVVGFP-------NVTEG-VGTAXXX 76
MTLEDFLA+ + + E G+ FP + EG +G
Sbjct: 113 MTLEDFLAKAEMDEGASDEIDVKIPTERLNNDGSYTFDFPMQRHSSFQMVEGSMGGGVTR 172
Query: 77 XXXXXXXXXXKRTLMDPADRAAMQRQKRMIKNRESAARSRERKQAYIXXXXXXXXXXXXX 136
R +M+ D+AA QRQKRMIKNRESAARSRERKQAY
Sbjct: 173 GKRG-------RVMMEAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEE 225
Query: 137 XXXXXXXXXXKNQKRLKEIKEQAVAV--VIRKKTQDLRRTNSMEW 179
++R K++ E + V R ++ L R++S+EW
Sbjct: 226 NEQLLKEIEESTKERYKKLMEVLIPVDEKPRPPSRPLSRSHSLEW 270
>AT2G36270.1 | chr2:15204980-15206571 REVERSE LENGTH=443
Length = 442
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 87 KRTLMDPADRAAMQRQKRMIKNRESAARSRERKQAY 122
KR + P ++ +RQ+RMIKNRESAARSR RKQAY
Sbjct: 344 KRVVDGPVEKVVERRQRRMIKNRESAARSRARKQAY 379
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.126 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,103,675
Number of extensions: 44064
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 6
Length of query: 179
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 87
Effective length of database: 8,584,297
Effective search space: 746833839
Effective search space used: 746833839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)