BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0437500 Os05g0437500|AK102974
         (279 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30260.1  | chr4:14816890-14818722 REVERSE LENGTH=281          313   7e-86
AT2G18840.1  | chr2:8158288-8159848 FORWARD LENGTH=282            306   1e-83

>AT4G30260.1 | chr4:14816890-14818722 REVERSE LENGTH=281
          Length = 280

 Score =  313 bits (802), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 157/188 (83%), Positives = 165/188 (87%)

Query: 92  AIAGDGFGPPPNTLTEPVLDTVKRDLARIVSNLKLVVFPNPFREDPGKALRDWDLWGPFF 151
           +I G GFG PPNTLTEPV DTVKRDL+RIVSNLKLVVFPNP+REDPGKALRDWDLWGPFF
Sbjct: 93  SIGGSGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFF 152

Query: 152 FIVFLGLTLSWSASVKKSEVXXXXXXXXXXXXXXXTLNVLLLGGRINFFQSLSLLGYCLF 211
           FIVFLGLTLSWSASVKKSEV               TLNVLLLGG I FFQSLSLLGYCLF
Sbjct: 153 FIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLF 212

Query: 212 PLDVGALICMLKDNVLLKIIAVVVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSV 271
           PLDVGA+ICMLKDNV+LK++ V VTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSV
Sbjct: 213 PLDVGAVICMLKDNVILKMVVVSVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSV 272

Query: 272 GFLIIAID 279
           GFLIIAI+
Sbjct: 273 GFLIIAIN 280



>AT2G18840.1 | chr2:8158288-8159848 FORWARD LENGTH=282
          Length = 281

 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/186 (82%), Positives = 161/186 (86%)

Query: 94  AGDGFGPPPNTLTEPVLDTVKRDLARIVSNLKLVVFPNPFREDPGKALRDWDLWGPFFFI 153
               FG PPNTLTEPV DTVKRDL+RIVSNLKLVVFPNP+REDPGKALRDWDLWGPFFFI
Sbjct: 96  GASAFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFI 155

Query: 154 VFLGLTLSWSASVKKSEVXXXXXXXXXXXXXXXTLNVLLLGGRINFFQSLSLLGYCLFPL 213
           VFLGLTLSWSASVKKSEV               TLNVLLLGG I FFQSLSLLGYCLFPL
Sbjct: 156 VFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPL 215

Query: 214 DVGALICMLKDNVLLKIIAVVVTLAWSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGF 273
           DVGA+ICMLKDNV+LK++ V VTLAWSSWAAYPFMS+AVNPRRKALALYPVFLMYVSVGF
Sbjct: 216 DVGAVICMLKDNVILKMVVVSVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGF 275

Query: 274 LIIAID 279
           LIIAI+
Sbjct: 276 LIIAIN 281



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,553,478
Number of extensions: 148948
Number of successful extensions: 399
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)