BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0436400 Os05g0436400|AK060776
(283 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G03120.1 | chr2:937554-940083 FORWARD LENGTH=345 418 e-117
AT4G33410.1 | chr4:16081640-16083119 FORWARD LENGTH=373 99 2e-21
AT1G01650.1 | chr1:233188-237647 REVERSE LENGTH=541 98 6e-21
AT1G63690.2 | chr1:23618490-23622082 FORWARD LENGTH=541 95 5e-20
AT1G05820.1 | chr1:1749776-1753767 FORWARD LENGTH=537 94 1e-19
AT2G43070.1 | chr2:17911233-17914776 REVERSE LENGTH=541 90 1e-18
>AT2G03120.1 | chr2:937554-940083 FORWARD LENGTH=345
Length = 344
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/283 (72%), Positives = 226/283 (79%)
Query: 1 MRFPLVGSAMXXXXXXXXXXXXXDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND 60
MRFPLVGSAM DLVN VLTAYFF+LGI AL ATLLP+I+RFLP WND
Sbjct: 61 MRFPLVGSAMLLSLFLLFKFLSKDLVNAVLTAYFFVLGIVALSATLLPAIRRFLPNPWND 120
Query: 61 NAIVWRAPLFHSLSVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLS 120
N IVWR P F SL VEFT+SQVVA IPG FFC WYA KKHWLANN+LG+SFCIQGIEMLS
Sbjct: 121 NLIVWRFPYFKSLEVEFTKSQVVAGIPGTFFCAWYAWKKHWLANNILGLSFCIQGIEMLS 180
Query: 121 LGSFKTGAILLSGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDAARPFSMLGLGDI 180
LGSFKTGAILL+GLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDA RP+SMLGLGDI
Sbjct: 181 LGSFKTGAILLAGLFFYDIFWVFFTPVMVSVAKSFDAPIKLLFPTGDALRPYSMLGLGDI 240
Query: 181 VIPGIFVALALRFDVSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVI 240
VIPGIFVALALRFDVSR + +YF SAF+GY VG+ +TI+VMNWFQAAQPALLYIVP VI
Sbjct: 241 VIPGIFVALALRFDVSRRRQPQYFTSAFIGYAVGVILTIVVMNWFQAAQPALLYIVPAVI 300
Query: 241 GFVAVHCLWNGEVKPLLXXXXXXXXXXXXXXXDTDSKQNKKKE 283
GF+A HC+WNG++KPLL T + NK +
Sbjct: 301 GFLASHCIWNGDIKPLLAFDESKTEEATTDESKTSEEVNKAHD 343
>AT4G33410.1 | chr4:16081640-16083119 FORWARD LENGTH=373
Length = 372
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 101/218 (46%), Gaps = 50/218 (22%)
Query: 74 SVEFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLSLGSFKTGAILLSG 133
S FTR Q + + + + HW+ NN+LGIS CI + + L + K A+LL
Sbjct: 122 SKSFTRIQGLLLVACAMTVVAWLISGHWVLNNLLGISICIAFVSHVRLPNIKICAMLLVC 181
Query: 134 LFFYDIFWVFFTP------VMVSVA------------------------KSFDAPIKLLF 163
LF YDIFWVFF+ VMV+VA K + P+K++F
Sbjct: 182 LFVYDIFWVFFSERFFGANVMVAVATQQASNPVHTVANSLNLPGLQLITKKLELPVKIVF 241
Query: 164 PT--------GDAARPFSMLGLGDIVIPGIFVALALRFD--VSRGIKN----------RY 203
P G +A F MLGLGD+ IP + +AL L FD +R + N +Y
Sbjct: 242 PRNLLGGVVPGVSASDFMMLGLGDMAIPAMLLALVLCFDHRKTRDVVNIFDLKSSKGHKY 301
Query: 204 FNSAFLGYTVGLTVTIIVMNWFQAAQPALLYIVPGVIG 241
A GY +GL + + QPALLY+VP +G
Sbjct: 302 IWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLG 339
>AT1G01650.1 | chr1:233188-237647 REVERSE LENGTH=541
Length = 540
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 19/185 (10%)
Query: 91 FCIWYAAKKH----WLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFFTP 146
F +++A K+ W+ ++LGIS I ++++ + + K G +LLS F YDIFWVF +
Sbjct: 336 FAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVPNLKVGFVLLSCAFMYDIFWVFVSK 395
Query: 147 ------VMVSVAKSFDA-----PIKLLFPTG-DAARPFSMLGLGDIVIPGIFVALALRFD 194
VM+ VA+ + P+ L P D +S++G GDI++PG+ V ALR+D
Sbjct: 396 WWFRESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSIIGFGDIILPGLLVTFALRYD 455
Query: 195 --VSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQA-AQPALLYIVPGVIGFVAVHCLWNG 251
++ +K+ YF Y +GL +T I +N QPALLYIVP ++G + V G
Sbjct: 456 WLANKRLKSGYFLGTMSAYGLGLLITYIALNLMDGHGQPALLYIVPFILGTLFVLGHKRG 515
Query: 252 EVKPL 256
++K L
Sbjct: 516 DLKTL 520
>AT1G63690.2 | chr1:23618490-23622082 FORWARD LENGTH=541
Length = 540
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 18/170 (10%)
Query: 90 FFCIWYAAKKH---WLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFFTP 146
F +W + H W+ +VLGI+ I ++++ + + K G +LLS F YDIFWVF +
Sbjct: 334 FAVLWAVYRVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSK 393
Query: 147 ------VMVSVA---KSFDAPIKLLFPTGDAARP---FSMLGLGDIVIPGIFVALALRFD 194
VM+ V KS + I +L P +S++G GDI++PG+ +A ALR+D
Sbjct: 394 KLFHESVMIVVTRGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLLIAFALRYD 453
Query: 195 --VSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQA-AQPALLYIVPGVIG 241
++ ++ YF A + Y +GL +T + +N QPALLYIVP +G
Sbjct: 454 WLANKTLRTGYFIWAMVAYGLGLLITYVALNLMDGHGQPALLYIVPFTLG 503
>AT1G05820.1 | chr1:1749776-1753767 FORWARD LENGTH=537
Length = 536
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 120/253 (47%), Gaps = 38/253 (15%)
Query: 29 VLTAYFFILGIAALCATLLPSIKRFLPKEWNDNAIVWRAPLFHSLSVEFTRSQVVASIPG 88
+LT +F I G+ + + I R K N + PL + S+ S+
Sbjct: 278 ILTIFFVIGGMQGMHNINVTLITRRCSKCGQKNL---KLPLLGNTSI--------LSLVV 326
Query: 89 FFFC-----IWYAAKKH---WLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIF 140
FC +W+ +K W ++ GI I +++ L + + ILL FFYDIF
Sbjct: 327 LLFCFVVAILWFMNRKTSHAWAGQDIFGICMMINVLQVARLPNIRVATILLCCAFFYDIF 386
Query: 141 WVFFTP------VMVSVAK-SFDA----PIKLLFPT-GDAARPFSMLGLGDIVIPGIFVA 188
WVF +P VM++VA+ S D P+ L P D ++M+G GDI+ PG+ +
Sbjct: 387 WVFISPLIFKQSVMIAVARGSKDTGESIPMLLRIPRLSDPWGGYNMIGFGDILFPGLLIC 446
Query: 189 LALRFDV--SRGIKNRYFNSAFLGYTVGLTVT---IIVMNWFQAAQPALLYIVPGVIGFV 243
RFD ++G+ N YF GY +GL +T + VMN QPALLY+VP +G
Sbjct: 447 FIFRFDKENNKGVSNGYFPWLMFGYGLGLFLTYLGLYVMN--GHGQPALLYLVPCTLGIT 504
Query: 244 AVHCLWNGEVKPL 256
+ L E++ L
Sbjct: 505 VILGLVRKELRDL 517
>AT2G43070.1 | chr2:17911233-17914776 REVERSE LENGTH=541
Length = 540
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 26/247 (10%)
Query: 29 VLTAYFFILGIAALCATLLPSIKRFLPKEWNDNAIVWRAPLFHSLSVEFTRSQVVASIPG 88
VLT +F I G+ + ++ I R + + PL ++SV ++ +I
Sbjct: 281 VLTIFFCIGGMQGMHNIIMAVILRKCRHLARKSV---KLPLLGTMSV----LSLLVNIVC 333
Query: 89 FFFCIWYAAKKH----WLANNVLGISFCIQGIEMLSLGSFKTGAILLSGLFFYDIFWVFF 144
F +++ K+H W+ ++LGI I ++++ L + K +LL F YDIFWVF
Sbjct: 334 LAFAVFWFIKRHTSYSWVGQDILGICLMITALQVVRLPNIKVATVLLCCAFVYDIFWVFI 393
Query: 145 TP------VMVSVAKSFDA-----PIKLLFPT-GDAARPFSMLGLGDIVIPGIFVALALR 192
+P VM+ VA+ + P+ L P D + M+G GDI+ PG+ ++ A R
Sbjct: 394 SPLIFHESVMIVVAQGDSSTGESIPMLLRIPRFFDPWGGYDMIGFGDILFPGLLISFASR 453
Query: 193 FD--VSRGIKNRYFNSAFLGYTVGLTVTIIVMNWFQA-AQPALLYIVPGVIGFVAVHCLW 249
+D R I N YF +GY +GL +T + + QPALLYIVP +G + L
Sbjct: 454 YDKIKKRVISNGYFLWLTIGYGIGLLLTYLGLYLMDGHGQPALLYIVPCTLGLAVILGLV 513
Query: 250 NGEVKPL 256
GE+K L
Sbjct: 514 RGELKEL 520
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,343,127
Number of extensions: 201991
Number of successful extensions: 559
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 6
Length of query: 283
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 186
Effective length of database: 8,447,217
Effective search space: 1571182362
Effective search space used: 1571182362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)