BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0432500 Os05g0432500|AK072834
         (163 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34350.2  | chr1:12534585-12535927 FORWARD LENGTH=189          171   2e-43

>AT1G34350.2 | chr1:12534585-12535927 FORWARD LENGTH=189
          Length = 188

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 120/188 (63%), Gaps = 25/188 (13%)

Query: 1   MEEAQAAVMAHLDQVSGLVQALSAELRRGIGPAADSLLAFVRAVDWTEPWLICLMVFHAT 60
           MEE ++A+   +D V+ LV+ LS ELR G  PA D+ L F  A+DW EPW++ LM FHA 
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  LLLTAVGLRRNANFQLFMLFLA-------------------------YSGVYLAEKINSY 95
           LLL  +  RR+ NF +F+  LA                          +GVY AE +N  
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLACKFPLKLSIYILYKKSLRSNDLTSLVAGVYFAENLNRE 120

Query: 96  MAEHWKSIATRNYFDRAGVFVSVVWSGPLIFISMVIVVSSLITLCRLMVKWKRAELRHRA 155
           + ++WKS +T+NYFD  GVF+S +WSGPL+ I+M+I++++L +LC L+VKWKRAELRHRA
Sbjct: 121 LRKNWKSFSTQNYFDSNGVFLSTLWSGPLLVIAMIILINTLFSLCYLIVKWKRAELRHRA 180

Query: 156 QLARDKQD 163
           +LA  K++
Sbjct: 181 RLAHTKEE 188



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,961,513
Number of extensions: 99216
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 107 (45.8 bits)