BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0426800 Os05g0426800|Os05g0426800
         (190 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09812.1  | chr1:3187817-3188580 FORWARD LENGTH=129             59   1e-09
AT1G11120.1  | chr1:3715229-3717320 FORWARD LENGTH=188             53   8e-08

>AT1G09812.1 | chr1:3187817-3188580 FORWARD LENGTH=129
          Length = 128

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 23/125 (18%)

Query: 55  STNASAISFGFAATAILISMFLLMAIFEHLIKPXXXXXXXXXXXXXXXXRXXXXXXXXXX 114
           ST+ +AISFGF ATAILISMFL+MAIFEHL +P                           
Sbjct: 24  STSMNAISFGFVATAILISMFLIMAIFEHLFRPENSSFDSPHQIRQRQRDGSSQF----- 78

Query: 115 XXXXXXXXXXXXXXVSPDKLFCTPGKLEVVPAEDLTVLMPGQRYPTFLAQPAPLLPWPRE 174
                             KL      + V    D++V+MPG++ P+ +A PAP LP  RE
Sbjct: 79  -----------------QKLADQASMVPVSTVVDVSVVMPGEKLPSHIALPAP-LPCRRE 120

Query: 175 GVRWP 179
           G+ WP
Sbjct: 121 GIHWP 125



>AT1G11120.1 | chr1:3715229-3717320 FORWARD LENGTH=188
          Length = 187

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 55  STNASAISFGFAATAILISMFLLMAIFEHLIKPXXXXXXXX----------XXXXXXXXR 104
             + +A+SFGF ATAILISMFL+MAIFE LI+                            
Sbjct: 35  DDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSDSSSSRVLPGMDSRVGFNG 94

Query: 105 XXXXXXXXXXXXXXXXXXXXXXXXVSPDKLFCTPGKLEVVPAEDLTVLMPGQRYPTFLAQ 164
                                   +   +LF        V +  ++VLMPG   PTF+A 
Sbjct: 95  AATKLGYQSPKASNNRIVFSFSFNILKSELFIVIILRMTVYSNGVSVLMPGDDIPTFIAH 154

Query: 165 PAPLLPWPREGVRWPPHGH 183
           PAP +P P + +    H H
Sbjct: 155 PAP-VPCPPQNISQSQHQH 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.141    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,366,546
Number of extensions: 69463
Number of successful extensions: 177
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 97
Effective length of database: 8,556,881
Effective search space: 830017457
Effective search space used: 830017457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)