BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0420500 Os05g0420500|AK070104
(711 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24160.1 | chr1:8553669-8555830 REVERSE LENGTH=541 68 1e-11
AT1G70100.3 | chr1:26403736-26405832 FORWARD LENGTH=505 62 2e-09
AT3G26050.1 | chr3:9521907-9524241 FORWARD LENGTH=534 61 3e-09
AT3G27350.2 | chr3:10126238-10127896 FORWARD LENGTH=320 59 1e-08
AT1G70950.1 | chr1:26752779-26755242 FORWARD LENGTH=479 58 2e-08
AT2G20960.1 | chr2:9007089-9009611 FORWARD LENGTH=749 58 2e-08
AT1G23060.1 | chr1:8170946-8172739 REVERSE LENGTH=368 54 4e-07
AT5G40700.2 | chr5:16292047-16293443 REVERSE LENGTH=304 52 9e-07
>AT1G24160.1 | chr1:8553669-8555830 REVERSE LENGTH=541
Length = 540
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 34 SISFGRFELESLAWEKWSVFANDRRHEEFGKFN--GLVAKKKAYFEEYFKRIRELKA 88
S+SFGRFE +SL+WEK+S F+ ++ EE GK G VA+KKAYFE ++K+I E KA
Sbjct: 38 SVSFGRFENDSLSWEKFSAFSPNKYLEEVGKCATPGSVAQKKAYFEAHYKKIAERKA 94
>AT1G70100.3 | chr1:26403736-26405832 FORWARD LENGTH=505
Length = 504
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 34 SISFGRFELESLAWEKWSVFANDRRHEEFGKF--NGLVAKKKAYFEEYFKRIRELKA 88
S+SFG+FE +SL+WEK+S F+ ++ EE K G VA+KKAYFE ++K+I E +A
Sbjct: 28 SVSFGKFENDSLSWEKFSSFSPNKYLEEVEKCATAGSVAQKKAYFESHYKKIAERRA 84
>AT3G26050.1 | chr3:9521907-9524241 FORWARD LENGTH=534
Length = 533
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 34 SISFGRFELESLAWEKWSVFANDRRHEEFGKFN--GLVAKKKAYFEEYFK 81
S+SFGR+ E+LAW +WS F +R EE +F G VA+KKA+FE +FK
Sbjct: 34 SVSFGRYANETLAWARWSAFTQNRYLEEVERFTKPGSVAEKKAFFEAHFK 83
>AT3G27350.2 | chr3:10126238-10127896 FORWARD LENGTH=320
Length = 319
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 11/77 (14%)
Query: 13 SQEESPVQDSSQGTPQVFDHGSISFGRFELESLAWEKWSVFANDRRHEEFGKFN--GLVA 70
S EE+ + SQ SISFG+F E+L W KWS F++ + EE K++ G VA
Sbjct: 22 SHEENTIHALSQ---------SISFGKFMTENLEWGKWSSFSHKKYVEEAEKYSRPGSVA 72
Query: 71 KKKAYFEEYFKRIRELK 87
+KKA+FE ++KRI E K
Sbjct: 73 QKKAFFEAHYKRIAEAK 89
>AT1G70950.1 | chr1:26752779-26755242 FORWARD LENGTH=479
Length = 478
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 65/238 (27%)
Query: 33 GSISFGRFELESLAWEKWSVFANDRRHEEFGKFN--GLVAKKKAYFEEYFKR--IRELKA 88
GSISFGRFE E L+WEK S F+++R EE K + G V + KA+FE +FK+ IR +
Sbjct: 21 GSISFGRFEKEGLSWEKRSSFSHNRYLEEVDKCSKPGSVTEMKAHFEAHFKKKGIRFPAS 80
Query: 89 LXXXX---------------XXTELNLDYSGDGS---DSSQTGEDVPTADQASPSGSGTL 130
L TE DY DGS D+SQ+ + + G G
Sbjct: 81 LESQTWGVHQTSNEPDDEAVHATESFEDYRSDGSFSEDTSQSNSVCNYSHEQEKCGQGK- 139
Query: 131 LDSMVQTGVQTIFENDLE-C--YDD---NDKEMLDKDISPSVGGTCQIEQEFRESASGGN 184
Q F+ + + C YD+ N E+++ D E GG+
Sbjct: 140 --------SQCEFDEESDHCVSYDEILVNSDEVIELD----------------EEEGGGD 175
Query: 185 HPDRMVDVLQQNTNCGPDDLGRPMESMMTPKRTVKKDS-LVGQAAKTMPKTVNMTSSN 241
H R+ D+++ N GP ++ P+ V +DS LV +A + + + SN
Sbjct: 176 H-GRVADLVECE-NLGPPEM---------PQEIVIQDSALVEEAGSKLDEHASKKPSN 222
>AT2G20960.1 | chr2:9007089-9009611 FORWARD LENGTH=749
Length = 748
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 108/259 (41%), Gaps = 54/259 (20%)
Query: 310 RPSTRERRPVTRDSSRKAP---EVATMCRPSTAERRPAT----------RELAPKQANTV 356
RP T ERR T D+ + P AT RP T E RP T R P +
Sbjct: 187 RPRTPERRSNTSDTRPRTPIHESAATGRRPQTPETRPRTPDHRYATYDNRPRTPIHESAA 246
Query: 357 VPCRPSTPNRRPMT----------RELAPVHSSIATPRRPSTAERRPIT---RGMAPMHP 403
RP TP RP T R P+H S AT RRP T E RP T RG +P
Sbjct: 247 TERRPQTPETRPRTPEHRSAIPDTRPRTPIHESAATGRRPQTPETRPRTAQRRGRSPEFM 306
Query: 404 SIATPVRPSTAERRPTSKQMAQKHVGMATPSR----PSTAERRPITREAARKNADVAILH 459
+ R T E +PT + + + TP + P + R P T+ + ++ D A L
Sbjct: 307 ERSPGPRSKTPEPQPTYFEPSSR-----TPKQRSKTPEPSPRIPQTQPMSHRSLDNAALK 361
Query: 460 RPSTAERRPITRETPQKHANVVALHRPSTAERRPVVREIAPKHADVTLTPARRPSTSERR 519
P T E RP T E H+P T E +P + E PK A + R P E+
Sbjct: 362 MPRTVETRPRTPE-----------HQPRTVETKPRIHESRPKTA---VYGGRSPDHREK- 406
Query: 520 PVTRETALRHS---NFTGS 535
+++E R S N+ GS
Sbjct: 407 -ISQEMGQRSSHAYNYLGS 424
>AT1G23060.1 | chr1:8170946-8172739 REVERSE LENGTH=368
Length = 367
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 33 GSISFGRFELESLAWEKWSVFANDRRHEEFGKFN--GLVAKKKAYFEEYFKR 82
GS+SFGRFE ESL+WE+ S F+ + EE +F+ G V + +A+FE +FK+
Sbjct: 21 GSVSFGRFEKESLSWERRSSFSRNIYLEEAERFSKPGSVTQMRAHFEAHFKK 72
>AT5G40700.2 | chr5:16292047-16293443 REVERSE LENGTH=304
Length = 303
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 34 SISFGRFELESLAWEKWSVFANDRRHEEFGKFN--GLVAKKKAYFEEYF 80
S+SFGRF E+L W KWS F++ + +E KF+ G VA+KKA+FE ++
Sbjct: 34 SVSFGRFMTENLEWGKWSSFSHKKYVDEAEKFSQPGSVAQKKAFFEAHY 82
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,363,591
Number of extensions: 676899
Number of successful extensions: 1960
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1900
Number of HSP's successfully gapped: 15
Length of query: 711
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 605
Effective length of database: 8,200,473
Effective search space: 4961286165
Effective search space used: 4961286165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)