BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0420200 Os05g0420200|AK067880
(352 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33780.1 | chr1:12244799-12246034 REVERSE LENGTH=326 233 9e-62
AT3G29240.1 | chr3:11191780-11192868 FORWARD LENGTH=318 162 2e-40
AT3G19780.1 | chr3:6870238-6874677 FORWARD LENGTH=1060 75 4e-14
>AT1G33780.1 | chr1:12244799-12246034 REVERSE LENGTH=326
Length = 325
Score = 233 bits (595), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 113 WRDVRANLVRREQELLVDPSAPAEQKTSSGEPAHQLPQKWAHPITMPEAGCVLVATEVLD 172
WR+ RANL E+ + G + + KWAHPI PE GCVLVATE LD
Sbjct: 99 WREFRANLFM---------KEQEEKAEAEGHESEPIGLKWAHPIPFPETGCVLVATEKLD 149
Query: 173 DDSIFERTVILLLRLGSRGTFDSPFGVILNRPLYTKIKNVNPSFQDQATPFGDSPLFFGG 232
F RTV+LLLR G+R + PFGV++NRPL+ IK++ + + AT F + L+FGG
Sbjct: 150 GYRTFARTVVLLLRAGTRHPQEGPFGVVINRPLHKNIKHMKSTKTELATTFSECSLYFGG 209
Query: 233 PVDMSMFLVRASDNSRLKGFEEVIPGIRFGFRTDLEKAAVLMKSGAIKSQDLRFFVGHAA 292
P++ SMFL++ D +++ GFEEV+PG+ FG R L++AAVL+K G +K Q+ RFFVG+A
Sbjct: 210 PLEASMFLLKTGDKTKIPGFEEVMPGLNFGTRNSLDEAAVLVKKGVLKPQEFRFFVGYAG 269
Query: 293 WDYEQLLSEIRAGYWAVASCSTELISDALTGDPSCLWTEILQLMGGHYSELSQKPKED 350
W +QL EI + YW VA+CS++LI A + + LW EILQLMGG YSELS+KPK D
Sbjct: 270 WQLDQLREEIESDYWHVAACSSDLICGASSEN---LWEEILQLMGGQYSELSRKPKLD 324
>AT3G29240.1 | chr3:11191780-11192868 FORWARD LENGTH=318
Length = 317
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 130/251 (51%), Gaps = 16/251 (6%)
Query: 99 LHNESKSNISNSNYWRDVRANLVRREQELLVDPSAPAEQKTS-------SGEPAHQLPQK 151
L + +N ++ WR+ RA LV EQ + P+ S + K
Sbjct: 64 LFKDCVNNSTSDADWREFRARLVAGEQAATSEKDQPSWSNPDMVVDYQPSSSSLITIGSK 123
Query: 152 WAHPITMPEAGCVLVATEVLDDDSIFERTVILLLRLGSRGTFDSPFGVILNRPLYTKIKN 211
WAH I PE GC+L+ATE LD IFE+TVILLL +G G P GVILNRP IK
Sbjct: 124 WAHKIHEPETGCLLIATEKLDGVHIFEKTVILLLSVGPSG----PIGVILNRPSLMSIKE 179
Query: 212 VNPSFQDQATPFGDSPLFFGGPVDMSMFLVR---ASDNSRLKG--FEEVIPGIRFGFRTD 266
+ D A F D LFFGGP++ +FLV DN K F +V+ G+ +G R
Sbjct: 180 TKSTILDMAGTFSDKRLFFGGPLEEGLFLVSPRSGGDNEVGKSGVFRQVMKGLYYGTRES 239
Query: 267 LEKAAVLMKSGAIKSQDLRFFVGHAAWDYEQLLSEIRAGYWAVASCSTELISDALTGDPS 326
+ AA ++K + +LRFF G+ W+ EQL +EI GYW VA+CS+ ++
Sbjct: 240 VGLAAEMVKRNLVGRSELRFFDGYCGWEKEQLKAEILGGYWTVAACSSTVVELGSAVQSH 299
Query: 327 CLWTEILQLMG 337
LW E+L L+G
Sbjct: 300 GLWDEVLGLIG 310
>AT3G19780.1 | chr3:6870238-6874677 FORWARD LENGTH=1060
Length = 1059
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 22/220 (10%)
Query: 97 NQLHNESKSNISNSNYWRDVRANLVRREQELLVDPSAPAEQKTSSGEPAHQLPQKWAHPI 156
N++ S S ++N D +V R +E PAE++ + + Q P H +
Sbjct: 845 NKVDQSSSSAVNNKVTDGDKLVEVVLRNRE-------PAEREVNHDQVNSQSPP--IHSL 895
Query: 157 T---MPEAGCVLVATEVLDDDSIFERTVILLLRLGSRGTFDSPFGVILNRPLYTKIKNVN 213
T + G VLVATE L F ++ IL+++ G F G+I N+ + K
Sbjct: 896 TNAPQVKTGTVLVATEKLAASLTFAKSKILIIKAGPEIGF---LGLIFNKRIRWK---SF 949
Query: 214 PSFQDQATPFGDSPLFFGGPVDMS----MFLVRASDNSRLKGFEEVIPGIRFGFRTDLEK 269
P + A ++PL FGGPV + L R D+S E+ PG+ F + +
Sbjct: 950 PDLGETAELLKETPLSFGGPVVDPGIPLLALTRERDSSTNHDHPEISPGVYFLDHQSVAR 1009
Query: 270 AAVLMKSGAIKSQDLRFFVGHAAWDYEQLLSEIRAGYWAV 309
+KS + + FF+G+++W YEQL EI G W V
Sbjct: 1010 RIQELKSRELNPSEYWFFLGYSSWSYEQLFDEIGLGVWDV 1049
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,594,460
Number of extensions: 255224
Number of successful extensions: 510
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,364,969
Effective search space: 2107972188
Effective search space used: 2107972188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)