BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0419600 Os05g0419600|J065212E11
         (107 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09645.1  | chr1:3123155-3124347 FORWARD LENGTH=107             55   6e-09
AT1G57765.2  | chr1:21393493-21394534 FORWARD LENGTH=118           54   1e-08
AT3G53490.1  | chr3:19832666-19834024 FORWARD LENGTH=226           50   2e-07

>AT1G09645.1 | chr1:3123155-3124347 FORWARD LENGTH=107
          Length = 106

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 50/79 (63%), Gaps = 3/79 (3%)

Query: 32  GLAGDTQTSKDDKKAQS---KGHTGRTXXXXXXXXXXXXXXSFFLFKYWQKKKREEQHAR 88
           GL+GD++ +    K +S      TG                SFFL+K WQKKKR+EQ+AR
Sbjct: 28  GLSGDSKNTNAGVKTESHTSSSKTGTKVILVLVGFVAVAMFSFFLYKLWQKKKRDEQYAR 87

Query: 89  LLKLFEEDDDIEVELGLRD 107
           LLKLFEEDD++EVELGLRD
Sbjct: 88  LLKLFEEDDELEVELGLRD 106



>AT1G57765.2 | chr1:21393493-21394534 FORWARD LENGTH=118
          Length = 117

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 53/96 (55%), Gaps = 12/96 (12%)

Query: 24  ICGQFATAGL---------AGDTQTSKDDKKAQS---KGHTGRTXXXXXXXXXXXXXXSF 71
           IC  F  A L         +GD  +S    KA+S      TG                SF
Sbjct: 22  ICLHFFLAMLYLDSVYQCISGDPNSSSTGAKAESHTSSSKTGTKVIFILLGFGAVAGLSF 81

Query: 72  FLFKYWQKKKREEQHARLLKLFEEDDDIEVELGLRD 107
           FL+K WQKKKR+EQ+ARLLKLFEEDD++EVELGLRD
Sbjct: 82  FLYKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 117



>AT3G53490.1 | chr3:19832666-19834024 FORWARD LENGTH=226
          Length = 225

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 29/34 (85%)

Query: 74  FKYWQKKKREEQHARLLKLFEEDDDIEVELGLRD 107
           +KYW+KKKR+++ AR LKLFE+ DDIE ELGL +
Sbjct: 190 YKYWRKKKRQQEQARFLKLFEDGDDIEDELGLEN 223



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,882,936
Number of extensions: 50316
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 107
Length of database: 11,106,569
Length adjustment: 76
Effective length of query: 31
Effective length of database: 9,022,953
Effective search space: 279711543
Effective search space used: 279711543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)