BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0418000 Os05g0418000|AK066648
(445 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44100.1 | chr2:18241804-18244864 FORWARD LENGTH=446 775 0.0
AT3G59920.1 | chr3:22135157-22138221 FORWARD LENGTH=445 772 0.0
AT5G09550.1 | chr5:2963850-2966465 FORWARD LENGTH=446 738 0.0
AT3G06540.1 | chr3:2035201-2037662 REVERSE LENGTH=564 91 1e-18
>AT2G44100.1 | chr2:18241804-18244864 FORWARD LENGTH=446
Length = 445
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/428 (85%), Positives = 400/428 (93%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDK 60
MDEEY+VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG+STSLNLNQLWK+FRGE+K
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60
Query: 61 PPAHLGASRDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPA 120
PAHLG+SRDYNVDM+PKFMMANG LVR LIHTDVTKYLSFKAVDGSYVF +GK+ KVPA
Sbjct: 61 APAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPA 120
Query: 121 TDMEALKSPLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGLSDDT 180
T MEALKSPLMG+FEKRRA FF YVQ+YDE DPKTH G+DL +TT++LIAK+GL +DT
Sbjct: 121 TPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDT 180
Query: 181 VDFIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFAR 240
+DFIGHA+ALH +D +L++PA DTV RMKLYAESLARFQGGSPYIYPLYGLGELPQ FAR
Sbjct: 181 IDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
Query: 241 LSAVYGGTYMLNKPDCKVEFDMEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKIGKVAR 300
LSAVYGGTYMLNKP+CKVEFD EGKV GVTSEGETAKCKKVVCDPSYL NKVRKIG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVVCDPSYLTNKVRKIGRVAR 300
Query: 301 AIAIMSHPIANTNDSHSVQIILPQKQLGRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAET 360
AIAIMSHPI NTNDS SVQ+ILPQKQLGRKSDMYVF CSY+HNVAPKGKFIAFVST+AET
Sbjct: 301 AIAIMSHPIPNTNDSQSVQVILPQKQLGRKSDMYVFCCSYSHNVAPKGKFIAFVSTDAET 360
Query: 361 DHPESELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETTVTDVLN 420
D+P++EL+PGIDLLG VDELFFDIYDRYEPVNEP+LDNCF+STSYDATTHF+TTV DVLN
Sbjct: 361 DNPQTELQPGIDLLGPVDELFFDIYDRYEPVNEPTLDNCFISTSYDATTHFDTTVVDVLN 420
Query: 421 MYTLITGK 428
MY LITGK
Sbjct: 421 MYKLITGK 428
>AT3G59920.1 | chr3:22135157-22138221 FORWARD LENGTH=445
Length = 444
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/428 (84%), Positives = 397/428 (92%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDK 60
MDEEY+VIVLGTGLKECILSGLLSVDG+KVLHMDRNDYYGG+STSLNLNQLWK+FRGE+K
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60
Query: 61 PPAHLGASRDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPA 120
P HLGASRDYNVDM+PKFMM NG LVRTLIHTDVTKYLSFKAVDGSYVF KGK+ KVPA
Sbjct: 61 APEHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKVPA 120
Query: 121 TDMEALKSPLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGLSDDT 180
T MEALKS LMG+FEKRRA FF +VQ+YDE DPKTH G+DLT +TT+ELIAKYGL +T
Sbjct: 121 TPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDGNT 180
Query: 181 VDFIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFAR 240
+DFIGHA+ALH +D++L++PA DTV RMKLYAESLARFQG SPYIYPLYGLGELPQ FAR
Sbjct: 181 IDFIGHAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAFAR 240
Query: 241 LSAVYGGTYMLNKPDCKVEFDMEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKIGKVAR 300
LSAVYGGTYMLNKP+CKVEFD GKV GVTSEGETAKCKK+VCDPSYLPNKVRKIG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEGGKVIGVTSEGETAKCKKIVCDPSYLPNKVRKIGRVAR 300
Query: 301 AIAIMSHPIANTNDSHSVQIILPQKQLGRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAET 360
AIAIMSHPI NTNDSHSVQ+I+PQKQL RKSDMYVF CSY+HNVAPKGKFIAFVST+AET
Sbjct: 301 AIAIMSHPIPNTNDSHSVQVIIPQKQLARKSDMYVFCCSYSHNVAPKGKFIAFVSTDAET 360
Query: 361 DHPESELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETTVTDVLN 420
D+P++ELKPG DLLG VDE+FFD+YDRYEPVNEP LDNCF+STSYDATTHFETTV DVLN
Sbjct: 361 DNPQTELKPGTDLLGPVDEIFFDMYDRYEPVNEPELDNCFISTSYDATTHFETTVADVLN 420
Query: 421 MYTLITGK 428
MYTLITGK
Sbjct: 421 MYTLITGK 428
>AT5G09550.1 | chr5:2963850-2966465 FORWARD LENGTH=446
Length = 445
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/429 (80%), Positives = 385/429 (89%)
Query: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDK 60
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG+S+SLNL QLWKRFRG D
Sbjct: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLTQLWKRFRGSDT 60
Query: 61 PPAHLGASRDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPA 120
P +LGASR+YNVDM+PKF+MANG LV+TLIHTDVTKYL+FKAVDGS+V+ KGKI+KVPA
Sbjct: 61 PEENLGASREYNVDMIPKFIMANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPA 120
Query: 121 TDMEALKSPLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGLSDDT 180
TD+EALKSPLMGLFEKRRAR FFIYVQDYDE DPK+H+GLDL+ +T RE+I+KYGL DDT
Sbjct: 121 TDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDT 180
Query: 181 VDFIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFAR 240
+DFIGHALALH DD YL++PAID VKR+KLYAESLARFQGGSPYIYPLYGLGELPQ FAR
Sbjct: 181 IDFIGHALALHNDDDYLDQPAIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240
Query: 241 LSAVYGGTYMLNKPDCKVEFDMEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKIGKVAR 300
LSAVYGGTYMLNKP+CKVEFD GK GVTS GETAKCKKVVCDPSYL KV+K+GKV R
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDGSGKAIGVTSAGETAKCKKVVCDPSYLSEKVKKVGKVTR 300
Query: 301 AIAIMSHPIANTNDSHSVQIILPQKQLGRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAET 360
A+ IMSHPI +TND+HSVQIILPQKQLGRKSDMY+F CSY HNVAPKGK+IAFVS EAET
Sbjct: 301 AVCIMSHPIPDTNDAHSVQIILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVSAEAET 360
Query: 361 DHPESELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETTVTDVLN 420
D+PE ELKPGI+LLG DE+F+ YD Y P N DNCF+S +YDATTHFE+TV DVL+
Sbjct: 361 DNPEEELKPGIELLGPTDEIFYHSYDTYVPTNIQEEDNCFISATYDATTHFESTVVDVLD 420
Query: 421 MYTLITGKT 429
MYT ITGKT
Sbjct: 421 MYTKITGKT 429
>AT3G06540.1 | chr3:2035201-2037662 REVERSE LENGTH=564
Length = 563
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 142/337 (42%), Gaps = 56/337 (16%)
Query: 5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWK----------- 53
YD+IV+GTG+ E +L+ S G VLH+D N +YG SL+L L
Sbjct: 15 YDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTSFLHSNSVSPPP 74
Query: 54 -------------RFRGEDKPPAHLGAS---------------RDYNVDMV-PKFMMANG 84
F D L +S R +NVD+ P+ +
Sbjct: 75 SPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFNVDLAGPRVVFCAD 134
Query: 85 TLVRTLIHTDVTKYLSFKAVDGSYVF-SKGKIHKVPATDMEALKSPLMGLFEKRRARNFF 143
+ ++ + Y+ FK++D S+V S G++ VP + K + L EK + FF
Sbjct: 135 ESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLMKFF 194
Query: 144 IYVQDY----DEADPKTHQGLDLTTMTTR--ELIAKYGLSDDTVDFIGHALALHRDDRYL 197
VQ + E D T + M + + ++K L I +A+A+ D+
Sbjct: 195 KLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSIILYAIAMLDYDQDN 254
Query: 198 NEPAIDTVK------RMKLYAESLARFQGG-SPYIYPLYGLGELPQGFARLSAVYGGTYM 250
E +K R+ LY S+ RF IYP+YG GELPQ F R +AV G Y+
Sbjct: 255 TETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQAFCRRAAVKGCIYV 314
Query: 251 LNKPDCKVEFDME-GKVCGV-TSEGETAKCKKVVCDP 285
L P + D E G GV + G+ +K++ DP
Sbjct: 315 LRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDP 351
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,703,910
Number of extensions: 424806
Number of successful extensions: 924
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 922
Number of HSP's successfully gapped: 4
Length of query: 445
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 343
Effective length of database: 8,310,137
Effective search space: 2850376991
Effective search space used: 2850376991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)