BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0414100 Os05g0414100|012-061-A10
         (198 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10820.2  | chr3:3387358-3390693 FORWARD LENGTH=581             52   2e-07
AT5G05140.1  | chr5:1520353-1522297 FORWARD LENGTH=437             50   6e-07

>AT3G10820.2 | chr3:3387358-3390693 FORWARD LENGTH=581
          Length = 580

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 5  LDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFT--APRAPPCHH 62
          LD WRE  R   G + I  +I++AI+VAAAD P+E   R DRI E+LF+    R   C H
Sbjct: 10 LDTWREYFR--RGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCDH 67



>AT5G05140.1 | chr5:1520353-1522297 FORWARD LENGTH=437
          Length = 436

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 5  LDRWRELLRGAAGSAGICDVIENAILVAAADAPQELLRRRDRICEILFT 53
          LD WRE  R   G + I  +I++AI+VAA D P +   RRD+I E+LF+
Sbjct: 7  LDSWREYFR-RRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFS 54



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,915,126
Number of extensions: 87403
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 2
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)