BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0411300 Os05g0411300|AK071931
(408 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56660.1 | chr3:20986217-20988213 REVERSE LENGTH=621 179 2e-45
AT2G40950.1 | chr2:17087823-17090326 REVERSE LENGTH=722 174 1e-43
AT3G10800.1 | chr3:3379326-3381430 FORWARD LENGTH=676 146 2e-35
>AT3G56660.1 | chr3:20986217-20988213 REVERSE LENGTH=621
Length = 620
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 213/469 (45%), Gaps = 116/469 (24%)
Query: 1 VKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNCXXXXXXXXXXXXGMHFPWM--PGY 58
VK+MHS I++L+S++S+ VAEN TLRQQ+ + +PWM P Y
Sbjct: 204 VKNMHSTISELSSKMSYFVAENVTLRQQMG--------TRFSSGPPMVPIVYPWMQYPAY 255
Query: 59 AMRPPGSHVPLVPIPRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 118
++P GS V L+PIPRL
Sbjct: 256 MVKPQGSQVALLPIPRLKPKHSVAKVKKFKKVASFSVFGFLFCMF--------------- 300
Query: 119 XXXXVFGAFIPGFNHNFGMCGQSDNAMFRNFGQSHARVLSVSSQDKSSLNNSDMIGVDVG 178
+FGA + N ++G +S+ + QS RVL V S +SD VG
Sbjct: 301 ----LFGALV---NISYGEY-KSNYVTDGVYDQSRGRVLVVDSSRVHCGGDSDQ---GVG 349
Query: 179 KMTGNTDGPGKKHQPAHNSSEILPALLYVPRNGKHVKINGNLIIHSVLASEKAVAHKASK 238
+ T+ G P NSSE L A L+VPRN K VKI+GNLIIHSVLASEKA + S+
Sbjct: 350 RNVSETENLG----PPRNSSEPLVASLFVPRNEKLVKIDGNLIIHSVLASEKA---RDSE 402
Query: 239 DDSDQSARDHKETSVAIARYLSLPG------KDVNRQ----------------------E 270
+++ T+ ++ L LP +DV++ +
Sbjct: 403 TKNEEGKSVLATTTKTLSPALPLPDSTSPRTRDVSKHLYSETGKGLSSSGSDDASNDQLK 462
Query: 271 TSSADGPLPQWFREGMEGPILNSGMCSEVFQFDISTASSNPGGXXXXXXXXXXXXXXXTE 330
++ A+G + QWFREG+ GP+ +SGMC+EVFQFD+ SSN G T+
Sbjct: 463 STIANGKMQQWFREGVAGPMFSSGMCTEVFQFDV---SSNSGA--------IIPASPHTQ 511
Query: 331 KIPAHSAAYHGKLKNRRVM-----------------------YNEAIP--------LTDP 359
+ S GK KNRR++ + E P L DP
Sbjct: 512 QCKNTSDTQKGK-KNRRILSGGLPVSDFNLTKEDHNSSSKDKFRETKPGPSMVVSVLVDP 570
Query: 360 REAGNGDGDPRV-SPKPLSKIFVVVLVDGVRYVTYSCTLPFKSSSPHLV 407
RE GNGD D + KP S++F+VVLVDGV+Y+TYSC LP + PHL+
Sbjct: 571 REGGNGDIDGMMGGTKPQSRVFIVVLVDGVKYITYSCVLP-RPDVPHLM 618
>AT2G40950.1 | chr2:17087823-17090326 REVERSE LENGTH=722
Length = 721
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 155/495 (31%), Positives = 216/495 (43%), Gaps = 123/495 (24%)
Query: 1 VKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNC------XXXXXXXXXXXXGMHFPW 54
V++MHS I DLN +IS+ +AENATLRQQL GG+ C +
Sbjct: 260 VRNMHSTITDLNGKISYFMAENATLRQQL-GGNGMCPPHLPPPPMGMYPPMAPMPYPWMP 318
Query: 55 MPGYAMRPPGSHVPLVPIPRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 114
P Y ++ GS VPL+PIPRL
Sbjct: 319 CPPYMVKQQGSQVPLIPIPRLKPQNTLGTSKAKKSESKKSEAKTKKVASISFLGLLFCLF 378
Query: 115 XXXXXXXXV---FGAFIPGFNHNFGMCGQSDNAMFRNFGQSHARVLSVS-SQDKSSLNNS 170
V +G F N+ +S+ + + Q RVL S S + ++NS
Sbjct: 379 LFGALAPIVNVNYGGISGAFYGNY----RSNYITDQIYSQHRDRVLDTSRSGAGTGVSNS 434
Query: 171 DMIGVDVGKMTGNTDGPGKKHQPAHNS-------SEILPALLYVPRNGKHVKINGNLIIH 223
+ G+ G+ ++D +K+ A S SE L A L+VPRN K VKI+GNLII+
Sbjct: 435 N--GMHRGR---DSDRGARKNISATESSVTPGNGSEPLVASLFVPRNDKLVKIDGNLIIN 489
Query: 224 SVLASEKAVAHKASKDDSDQSARDHKETSVAIARYLSLPGKDVNRQE------------- 270
S+LASEKAVA + + + ++ A + ++ +LP DV R E
Sbjct: 490 SILASEKAVASRKASESKERKA----DLMISKDYTPALPLPDVGRTEELAKHLYRSKAEK 545
Query: 271 -----------------TSSADGPLPQWFREGMEGPILNSGMCSEVFQFDISTASSNPGG 313
T +A+G + QWFREG+ GP+ +SGMC+EVFQFD+S+ S
Sbjct: 546 QKALSSGSADTLKDQVKTKAANGEMQQWFREGVAGPMFSSGMCTEVFQFDVSSTSG---- 601
Query: 314 XXXXXXXXXXXXXXXTEKIPAHS--AAYHG-------KLKNRRVMYNEAIP--------- 355
IPA + +A HG K +NRR++ IP
Sbjct: 602 ----------------AIIPAATNVSAEHGKNTTDTHKQQNRRILRGLPIPLPGSDFNLT 645
Query: 356 ----------------------LTDPREAGNGDGDPRV-SPKPLSKIFVVVLVDGVRYVT 392
L DPRE G+GD D + PK LS++FVVVL+D +YVT
Sbjct: 646 KEHQRNSSSKEIKPASSMVVSVLVDPREGGDGDIDGMIGGPKSLSRVFVVVLLDSAKYVT 705
Query: 393 YSCTLPFKSSSPHLV 407
YSC LP +S +PHLV
Sbjct: 706 YSCVLP-RSGAPHLV 719
>AT3G10800.1 | chr3:3379326-3381430 FORWARD LENGTH=676
Length = 675
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 147/483 (30%), Positives = 195/483 (40%), Gaps = 107/483 (22%)
Query: 1 VKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNCXXXXXXXXXXXXGMHFPWMP--GY 58
VKSM++ I +LN +I++V+AEN LRQQ++ V + + WMP Y
Sbjct: 222 VKSMNATIAELNGKIAYVMAENVALRQQMA---VASGAPPMNPYMAAPPLPYQWMPYPPY 278
Query: 59 AMRPPGSHVPLVPIPRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 118
+R GS PLVPIP+L
Sbjct: 279 PVRGYGSQTPLVPIPKLNPKPVSSCRPKKAESKKNEGKSKLKKVASISFIGILFFVF--- 335
Query: 119 XXXXVFGAFIPGFNHNFG-----MCGQSDNAMFRNFGQSHARVLSVSSQDKSSLNNSDMI 173
+FG +P N NFG G S R + + RVL V N+
Sbjct: 336 ----LFGTLVPFMNVNFGGERGSFGGLSKYDGHRYYDEHKGRVLMVGDGSDVRRNS---- 387
Query: 174 GVDVGKMT------GNTDGPGKKHQPAH-----------NSSEILPALLYVPRNGKHVKI 216
G+ G + G D G AH N+S+ L A LYVPRN VKI
Sbjct: 388 GISEGNIHSSRISHGERDSCGGVDYNAHPKVEGRPSSLSNASDPLFASLYVPRNDGLVKI 447
Query: 217 NGNLIIHSVLASEKAVAHKASKDDSDQSARDHKETSV--AIARYLSLPGKDVN------R 268
+GNLIIHSVLASEKA K+ ++ + ++ A++ L++PG N
Sbjct: 448 DGNLIIHSVLASEKARGL-GKKNITETVKTKEPDLTIPGALSSALAVPGVRGNAAMLPHS 506
Query: 269 QETSSADGPLPQWFREGMEGPILNSGMCSEVFQFDISTASSNPGGXXXXXXXXXXXXXXX 328
SS L QWF EG GP+++ MC+EVFQFDI+ PG
Sbjct: 507 TALSSEGKRLHQWFHEGGSGPLMDYSMCTEVFQFDIA-----PGAIVPSSVSSISAEH-- 559
Query: 329 TEKIPAHSAAYHGK-LKNRRVMYNEAIP-------------------------------- 355
+ HGK +KNRR++ E +P
Sbjct: 560 -----LQNVTTHGKRMKNRRIL--EGLPVSLVASELNITGTQPNKDAQNKTFNGNTNKPT 612
Query: 356 ---------LTDPREAGNGDGDPRVSPKP--LSKIFVVVLVDGVRYVTYSCTLPFKSSSP 404
L DPRE + + D V P P LS+IFVVVL+D V+YVTYSC LP S
Sbjct: 613 SSSSMVVSVLLDPREVVDSETDRVVPPNPKSLSRIFVVVLLDSVKYVTYSCVLP--RSGL 670
Query: 405 HLV 407
HLV
Sbjct: 671 HLV 673
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,708,328
Number of extensions: 294353
Number of successful extensions: 714
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 704
Number of HSP's successfully gapped: 9
Length of query: 408
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,337,553
Effective search space: 2559628771
Effective search space used: 2559628771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)