BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0409300 Os05g0409300|AK065214
(184 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12490.2 | chr3:3960523-3961876 REVERSE LENGTH=235 92 1e-19
AT5G05110.1 | chr5:1507615-1508765 REVERSE LENGTH=233 79 1e-15
AT2G40880.1 | chr2:17057463-17057930 FORWARD LENGTH=126 69 1e-12
AT5G12140.1 | chr5:3923295-3923936 REVERSE LENGTH=102 61 4e-10
>AT3G12490.2 | chr3:3960523-3961876 REVERSE LENGTH=235
Length = 234
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 56/72 (77%)
Query: 71 YNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEF 130
+NK + A LEFAR+VKAK QVV GTLH L LE++++G+K LY AKVWVKPWL+FK + EF
Sbjct: 63 HNKKENALLEFARVVKAKEQVVAGTLHHLTLEILEAGQKKLYEAKVWVKPWLNFKELQEF 122
Query: 131 RHVGDSQSQSAT 142
+ D+ + +++
Sbjct: 123 KPASDAPAITSS 134
>AT5G05110.1 | chr5:1507615-1508765 REVERSE LENGTH=233
Length = 232
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 50/66 (75%)
Query: 71 YNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEF 130
+N+ + A LE AR++KA QVV G L+ L LEV+++G+K +Y AKVWVKPW++FK + EF
Sbjct: 72 HNRRENAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVWVKPWMNFKQLQEF 131
Query: 131 RHVGDS 136
+++ S
Sbjct: 132 KNIIPS 137
>AT2G40880.1 | chr2:17057463-17057930 FORWARD LENGTH=126
Length = 125
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 71 YNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEF 130
+NK Q LEF +IVKA+ QVV GT++ L LE + + + AKVWVKPW++FK + EF
Sbjct: 61 HNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEF 120
Query: 131 RH 132
+
Sbjct: 121 KE 122
>AT5G12140.1 | chr5:3923295-3923936 REVERSE LENGTH=102
Length = 101
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 71 YNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEF 130
+NKN+ LE+ R++ AK QVV GT+H L +EV D +Y AKV K W + K + F
Sbjct: 36 HNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESF 95
Query: 131 RHVGD 135
H+ D
Sbjct: 96 NHLHD 100
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,810,639
Number of extensions: 84658
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 4
Length of query: 184
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 92
Effective length of database: 8,584,297
Effective search space: 789755324
Effective search space used: 789755324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)