BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0405900 Os05g0405900|AK072244
(1006 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03380.1 | chr1:836155-840362 FORWARD LENGTH=960 723 0.0
AT1G54710.1 | chr1:20417019-20420733 REVERSE LENGTH=928 706 0.0
AT5G54730.1 | chr5:22233977-22236804 REVERSE LENGTH=764 340 2e-93
>AT1G03380.1 | chr1:836155-840362 FORWARD LENGTH=960
Length = 959
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/736 (53%), Positives = 497/736 (67%), Gaps = 28/736 (3%)
Query: 1 MRRGKGGRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAEDEKDQVL 60
M++GKG +GLLP+S +IISSCLKTVS+NA +VAS+VRSAGASVAASI+ AED+KDQV
Sbjct: 2 MKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSAGASVAASIS-AAEDDKDQVT 60
Query: 61 WAGFDKLELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPVYS 120
WAGF LEL +HVLL+GY NGFQV DVEDA+N ELVSKR GPV+FLQMQP P S
Sbjct: 61 WAGFGILELGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS 120
Query: 121 DGTEGFRTSHPMLLVVAGDETNGSGMVQG-GRLSALIRDNSSETPNGNCISTPTVVRFYS 179
EGF SHP+LLVVAGDETNG+G+ + +L RD SS++ G+ I+ PT VRFYS
Sbjct: 121 GDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYS 180
Query: 180 LKSHSYVHVLRFRSAVYIVRCSPRIVAVALAAQVYCFDAVTLENKFSVLTYPL-----QG 234
L+SHSYV+VLRFRS+V ++RCS R+VAV LA Q+YC DA+TLENKFSVLTYP+ QG
Sbjct: 181 LRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQG 240
Query: 235 APGINIGYGPMAVGPRWLAYASNSPLLSSTGRLSPQNXXXXXXXXXXXXXXXXXXXARYA 294
+N+GYGPMAVGPRWLAYAS S + TGRLSPQ ARYA
Sbjct: 241 TTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYA 300
Query: 295 MESSKQIAAGIINLGDMGYKTLSKYCQEFXXXXXXXXXXXXXXXXXXXXXXXVHPLEADN 354
MESSKQ+A G+INLGDMGYKTLSKYCQ+ V +A+N
Sbjct: 301 MESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGG----VSGSDAEN 356
Query: 355 AGMVVIKDFISKEIISQFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPTVIANS 414
AGMV +KD +S ++SQF+AHTSPISALCFDPSGTLLVTASV G+NINVF+IMP+ N+
Sbjct: 357 AGMVAVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNA 416
Query: 415 SGSIRYDWTASHVHLYKLYRGMTAAVIQDISFSHFSQWISIVSSRGTCHIFTLSPFGGDA 474
G + Y+W +SHVHL+KL+RG+T+A++QDI FS SQW++I+SS+GTCHIF L+ G DA
Sbjct: 417 PGDLSYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDA 476
Query: 475 SLLPQNSHSDGLPLAPCQSRPWWSKPSFLMDHQLHPAPSTVTNSVVSRIKNSSSGWLNTV 534
+ P + P S PWW S + Q P+ V SVVSRIK SS GWLNTV
Sbjct: 477 AFQP--CEGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGWLNTV 534
Query: 535 SNVAASASGKLSVPSGAVTAVFHNSNYEGSLPVPSKANAMEHLLVYSPSGHVIQHELLPX 594
SN +A+GK+ VPSGAV AVFH S L + S+ NA+EH+LVY+PSGHV+QHELLP
Sbjct: 535 SNATTAATGKVFVPSGAVAAVFHKS-VTHDLQLNSRTNALEHILVYTPSGHVVQHELLPS 593
Query: 595 XXXXX--XXXPIVGPGSLQIQDDELHVTAEPTQWWDVCRRTNWPERDENIANIVFHNQRN 652
+ +Q+Q+D+L V EP QWWDVCRR++W E +E + + Q +
Sbjct: 594 VCTESPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITEKQYD 653
Query: 653 SMMAMDASDCDSEHSDSVPS----DGISGKEMMRS-----RERSSWYLSNAEVQISSWRI 703
S+ + H D+ S S + ++S ERS YLSN EV+++S +
Sbjct: 654 ---LETVSNHLTSHEDACLSLDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGML 710
Query: 704 PIWQKSKIFFYVIDQP 719
P+WQ SKI F+V+D P
Sbjct: 711 PVWQNSKISFHVMDSP 726
>AT1G54710.1 | chr1:20417019-20420733 REVERSE LENGTH=928
Length = 927
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/719 (53%), Positives = 479/719 (66%), Gaps = 46/719 (6%)
Query: 7 GRNGLLPSSLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAEDEKDQVLWAGFDK 66
G NG LP+SL+ IS+C++T SS VRSA ASVAAS++ + + KDQVLW+ FD+
Sbjct: 23 GTNGFLPNSLKFISTCIRTASSG-------VRSASASVAASLSSDSHELKDQVLWSSFDR 75
Query: 67 LELHPSSFKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPVYSDGTEGF 126
L SSFK+VLL+GY+NGFQVLD++D+ +V E VS+RD PVTFLQMQP P DG EGF
Sbjct: 76 LHTSESSFKNVLLLGYTNGFQVLDIDDSNDVTEFVSRRDDPVTFLQMQPLPAKCDGVEGF 135
Query: 127 RTSHPMLLVVAGDETNGSGMVQGGRLSALIRDNSSETPNGNCISTPTVVRFYSLKSHSYV 186
R+SHP+LL VA DE GSG + R ++ N E P +PTVVRFYSL+SH+YV
Sbjct: 136 RSSHPILLAVA-DEAKGSGPIVTSRDGSV--RNGYEDP---LALSPTVVRFYSLRSHNYV 189
Query: 187 HVLRFRSAVYIVRCSPRIVAVALAAQVYCFDAVTLENKFSVLTYPL-----QGAPGINIG 241
HVLRFRS VY+VRCSPRIVAV L +Q+YCFDA+TLENKFSVL+YP+ QG G+N+G
Sbjct: 190 HVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYPVPQLGNQGISGVNVG 249
Query: 242 YGPMAVGPRWLAYASNSPLLSSTGRLSPQNXXXXXXXXXXXXXXXXXXXARYAMESSKQI 301
YGPMAVG RWLAYASNSPL SS GRLSPQN ARYAMESSK +
Sbjct: 250 YGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPNNGNLV-ARYAMESSKHL 308
Query: 302 AAGIINLGDMGYKTLSKYCQEFXXXXXXXXXXXXXXXXXXXXXXXVHPLEADNAGMVVIK 361
AAG++NLGD GYKT+SKYCQ+ H E+D G V++K
Sbjct: 309 AAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKVGRVGS--HSAESDVVGTVIVK 366
Query: 362 DFISKEIISQFRAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPTVIANSSGSIRYD 421
DF S+ II+QFRAHTSPISALCFDPSGTLLVTAS+HG+NINVFRIMPT N G+ YD
Sbjct: 367 DFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIMPTPTKNGPGAQSYD 426
Query: 422 WTASHVHLYKLYRGMTAAVIQDISFSHFSQWISIVSSRGTCHIFTLSPFGGDASLLPQNS 481
W++SHV LYKL+RGMT+AVIQDI FS +SQWI+IVSS+ TCHI+ LSPFGG+ L +NS
Sbjct: 427 WSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSPFGGENVLEIRNS 486
Query: 482 HSDGLPLAPCQSRPWWSKPSFLMDHQLHPAPSTVTNSVVSRIKNSSSGWLNTVSNVAASA 541
DG LAP S PWWS PSF+ H +P P++VT SVVSRIK N + A+S
Sbjct: 487 QFDGPTLAPTLSLPWWSSPSFMTTHFSYPPPASVTLSVVSRIK------CNNFFHAASSV 540
Query: 542 SGKLSVPSGAVTAVFHNSNYEGSLPVPSKANAMEHLLVYSPSGHVIQHELLPXXXXXXXX 601
GK + PSG + AVFH S + S S + A+++LLVY+PSGHV+Q++L+P
Sbjct: 541 VGKPTFPSGCLAAVFHQSVPQESQ---SSSPALDYLLVYTPSGHVVQYKLIPSLGGDQAE 597
Query: 602 XPIV-GPGSLQIQDDELHVTAEPTQWWDVCRRTNWPERDENIANIVFHNQRNSMMAMDAS 660
G S ++EL V EP Q WDVCRR +WPER+ENI + + ++N+ + +D S
Sbjct: 598 SNTRNGATSGLTSEEELRVKVEPVQCWDVCRRADWPEREENICGLTYGGRKNAELTVDTS 657
Query: 661 DCDSEHSDSVPSDGISGKEMMRSRERSSWYLSNAEVQISSWRIPIWQKSKIFFYVIDQP 719
D + + + E+ YL+NAEV I+S R PIWQ S+I FY + P
Sbjct: 658 DSE---------------DQTKPLEKHHVYLANAEVLINSGRKPIWQNSEISFYPMYPP 701
>AT5G54730.1 | chr5:22233977-22236804 REVERSE LENGTH=764
Length = 763
Score = 340 bits (873), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 235/590 (39%), Positives = 319/590 (54%), Gaps = 100/590 (16%)
Query: 14 SSLRIISSCLKTVSSNAGSVASTVRSAGASVAASIAPQAEDEKDQVLWAGFDKLELHPSS 73
SS R +S+CLK +SS A +VA + SA +S S DQVLWAGFD L+
Sbjct: 23 SSFRALSNCLKVISSGASTVARSAVSAASSAVES-------HHDQVLWAGFDNLQKEDGD 75
Query: 74 FKHVLLVGYSNGFQVLDVEDAANVCELVSKRDGPVTFLQMQPTPVYSDGTEG-FRTSHPM 132
+ VLL+ + +GFQV DVED NV +VS DG F+QM P+ S + F S P
Sbjct: 76 TRRVLLLAFKSGFQVWDVEDTENVHVIVSAHDGQAFFMQMLLNPINSGVLDDRFYKSRP- 134
Query: 133 LLVVAGDETNGSGMVQGGRLSALIRDNSSETPNGNCISTPTVVRFYSLKSHSYVHVLRFR 192
LL V GD ++ + SS+ P ++TPT V YSLKS SYVH L+FR
Sbjct: 135 LLAVCGDYSS--------------KKISSDNPGSETVATPTNVYVYSLKSQSYVHTLKFR 180
Query: 193 SAVYIVRCSPRIVAVALAAQVYCFDAVTLENKFSVLTYPLQGAPGINIGYGPMAVGPRWL 252
+ +Y VRC RIVAV AAQ+ CFDA TLE + ++T + + +GYGP+AVGPRW+
Sbjct: 181 ATIYSVRCCSRIVAVLQAAQIDCFDAATLEMDYRIVTNSIV-CGSLGVGYGPLAVGPRWI 239
Query: 253 AYASNSPLLSSTGRLSPQNXXXXXXXXXXXXXXXXXXXARYAMESSKQIAAGIINLGDMG 312
AY+ + SS+ + + A++A +SSKQ+A+GI NLGD G
Sbjct: 240 AYSGSRIATSSSAIFTSE---------IVSLSTSSPSVAQFARDSSKQLASGIANLGDKG 290
Query: 313 YKTLSKYCQEFXXXXXXXXXXXXXXXXXXXXXXXVHPLEADNAGMVVIKDFISKEIISQF 372
Y++L+KYC E +A++ GMV++KD +K +I+QF
Sbjct: 291 YRSLTKYCSEVLPNPYIPGLKGIGVGNEKVA-------DAESIGMVIVKDITNKSVITQF 343
Query: 373 RAHTSPISALCFDPSGTLLVTASVHGHNINVFRIMPTVIANSSGSIRYDWTASHVHLYKL 432
+AH SPISALCFD SG LLVTAS+ GHNINVFRIMPT+ ++S +++ T + HL++L
Sbjct: 344 KAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPTI--STSRAVK---TTTFAHLFRL 398
Query: 433 YRGMTAAVIQDISFSHFSQWISIVSSRGTCHIFTLSPFG-GDASLLPQNSHSDGLPLAPC 491
RG T AVIQDI FS S I + SSRGT H+F ++P GDA
Sbjct: 399 QRGFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINPEKEGDA----------------- 441
Query: 492 QSRPWWSKPSFLMDHQLHPAPSTVTNSVVSRIKN-SSSGWLNT--VSNVAASASGKLSVP 548
P P S +SRI++ +SSGW+ T + AA+ SVP
Sbjct: 442 ------------------PVPM----SAISRIRSGNSSGWIGTVSGAASAAAGMVAGSVP 479
Query: 549 SGAVTAVF------HNSNYEGSLP-VPSKANAMEHLLVYSPSGHVIQHEL 591
G VT+ F N+NY GS+ + SK N LLV++PSG + Q+ L
Sbjct: 480 -GTVTSTFCYCDEKSNNNYYGSVADMCSKTN----LLVFAPSGCMTQYAL 524
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,858,667
Number of extensions: 796849
Number of successful extensions: 2361
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2339
Number of HSP's successfully gapped: 5
Length of query: 1006
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 898
Effective length of database: 8,145,641
Effective search space: 7314785618
Effective search space used: 7314785618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)