BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0404700 Os05g0404700|Os05g0404700
(175 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22745.1 | chr4:11947421-11948514 REVERSE LENGTH=205 137 4e-33
AT3G63030.1 | chr3:23295394-23296425 FORWARD LENGTH=187 135 1e-32
AT5G35330.1 | chr5:13523725-13525270 REVERSE LENGTH=273 110 5e-25
AT4G00416.1 | chr4:179022-179513 FORWARD LENGTH=164 65 2e-11
AT5G35338.2 | chr5:13549343-13550124 REVERSE LENGTH=156 64 3e-11
>AT4G22745.1 | chr4:11947421-11948514 REVERSE LENGTH=205
Length = 204
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
Query: 5 GKPG-FITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDIQYD 63
G PG I ++A+ C KC KWR I T++E+E IR P+FC K SCE D+ YD
Sbjct: 46 GTPGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYD 105
Query: 64 TSRIWAIDRPNIPKPPPKTERLLIMRNDLSKMDAYYVLPNGKRAKGKPDIDRFLKENPEY 123
+SR W ID+P +P+ P +R LI+R D SKMDAYY+ P GK+ K + +I F+ N +Y
Sbjct: 106 SSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDY 165
Query: 124 AATLPLSSFNFSTPKIVKETV 144
L L FNF+ PK+++ETV
Sbjct: 166 KYAL-LGDFNFTVPKVMEETV 185
>AT3G63030.1 | chr3:23295394-23296425 FORWARD LENGTH=187
Length = 186
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 87/139 (62%), Gaps = 2/139 (1%)
Query: 7 PG-FITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDIQYDTS 65
PG I YA C C KWR I ++EE+E IR P+ C KK+ SCE P DI YD+S
Sbjct: 21 PGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEPADIDYDSS 80
Query: 66 RIWAIDRPNIPKPPPKTERLLIMRNDLSKMDAYYVLPNGKRAKGKPDIDRFLKENPEYAA 125
R W ID+P +PK P +R L++R D SKMD YY P GK+ + + +I F++ NPE+
Sbjct: 81 RTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFVEANPEF-R 139
Query: 126 TLPLSSFNFSTPKIVKETV 144
PL FNF+ PK++++TV
Sbjct: 140 NAPLGDFNFTVPKVMEDTV 158
>AT5G35330.1 | chr5:13523725-13525270 REVERSE LENGTH=273
Length = 272
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 7/140 (5%)
Query: 10 ITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKR----DCSCEHPEDIQYDTS 65
I + + C C KWR +P+ +++E IRE P+FC R D SC+ P DI D +
Sbjct: 56 IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115
Query: 66 RIWAIDRPNIPKPPPKTERLLIMRNDLSK--MDAYYVLPNGKRAKGKPDIDRFLKENPEY 123
R+WAID+PNI +PP +RLL +R + D YYV P+GK+ + ++ ++L +N EY
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175
Query: 124 AA-TLPLSSFNFSTPKIVKE 142
+ LS F+F PK +++
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195
>AT4G00416.1 | chr4:179022-179513 FORWARD LENGTH=164
Length = 163
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 11/133 (8%)
Query: 6 KPGFITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKRDCSCEHPEDI--QYD 63
K I YA C KC K R+I ++E++E IR K + C + CE P D+ +D
Sbjct: 5 KTTLIDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFD 59
Query: 64 TSRI-WAIDRPNIPKPPPKTERLLIMRNDLSKMDAYY--VLPNGKRAKGKPDIDRFLKEN 120
+ + W D +IPK P +R+L++R + K+D YY + P KR K ++ F+++
Sbjct: 60 SLTMRWFQDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDK 119
Query: 121 PEYA-ATLPLSSF 132
E+ TL SF
Sbjct: 120 EEFKDMTLEEVSF 132
>AT5G35338.2 | chr5:13549343-13550124 REVERSE LENGTH=156
Length = 155
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 15 ITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKR----DCSCEHPEDIQYDTSRIWAI 70
+ C C+KWR IP+ + + +I+E P+ C + SC P+D T W
Sbjct: 2 VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW-- 57
Query: 71 DRPNIPKPPPKTERLLIMRNDLSKM-DAYYVLPNGKRAKGKPDIDRFLKENPEYA-ATLP 128
P+IP P R + +R++ +K D YY P+G+R + ++ FL +PEY +
Sbjct: 58 --PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVN 115
Query: 129 LSSFNFSTPK 138
S F+F PK
Sbjct: 116 RSQFSFQIPK 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,452,696
Number of extensions: 197369
Number of successful extensions: 567
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 5
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)