BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0400700 Os05g0400700|AK072739
(177 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59180.1 | chr5:23883499-23884976 FORWARD LENGTH=177 322 1e-88
AT4G14660.1 | chr4:8406500-8407036 REVERSE LENGTH=179 78 2e-15
AT3G22900.1 | chr3:8115645-8116169 FORWARD LENGTH=175 72 2e-13
AT4G14520.1 | chr4:8342471-8343073 FORWARD LENGTH=201 49 1e-06
>AT5G59180.1 | chr5:23883499-23884976 FORWARD LENGTH=177
Length = 176
Score = 322 bits (824), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 153/176 (86%), Positives = 168/176 (95%)
Query: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60
MFFHIVLERNMQLHPR FG +L++ LVSKL+KDVEGTCSGRHGFVVAITG++ +GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
+GTG+VTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176
+GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVI+DP AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176
>AT4G14660.1 | chr4:8406500-8407036 REVERSE LENGTH=179
Length = 178
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 1 MFFHIVLERNMQLHPRHF---GPHLRDKLVSKLIKDVEGTCSGRH-GFVVAITGVEDVGK 56
MF + L N+ + + G L+ ++ +L++ + + G+ VA+T ++ +G+
Sbjct: 1 MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60
Query: 57 GLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPD 115
G IRE TG V FPV + + F+ FKGEI+ VV V K G F GP++ +++S +P
Sbjct: 61 GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMP- 119
Query: 116 DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDAT--EIFCIGTIKDDFLGVISD 172
D ++ G+ P + S +IQ ++ VR+ +IG + E + +++ D+LG +S+
Sbjct: 120 DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLSE 177
>AT3G22900.1 | chr3:8115645-8116169 FORWARD LENGTH=175
Length = 174
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 43 GFVVAITGVEDVGKGLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
G+++ T +E++G+G I+E TG + FPV + + F+ FKGEI+ VV V+K G F ++G
Sbjct: 46 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105
Query: 103 PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATE--IFCIG 160
P +I +H+ EF G+ P + S +IQ + VR ++ T E +
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 164
Query: 161 TIKDDFLG 168
+I D LG
Sbjct: 165 SIDGDNLG 172
>AT4G14520.1 | chr4:8342471-8343073 FORWARD LENGTH=201
Length = 200
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 1 MFFHIVLERNMQLHPRHFG---PHLRDKLVSKLIKDV--EGTCSGRHGFVVAITGVEDVG 55
MF + + R++ + +H PH ++ +L++D+ E C HGF + IT ++ +G
Sbjct: 1 MFSEVEMARDVAICAKHLNGQSPH--QPILCRLLQDLIHEKACR-EHGFYLGITALKSIG 57
Query: 56 KGLIR-------EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQI-F 107
+TFPV + C F P +G+IL+ V V G F +GP++ +
Sbjct: 58 NNKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAY 117
Query: 108 VSNHLIPDDMEFQS----GDVPNYTTSDGSVKIQKDSEVRLKIIGTR 150
+S +P S + P++ D S KI VR +++ R
Sbjct: 118 LSLLKMPHYHYVHSPLSEDEKPHFQKDDLS-KIAVGVVVRFQVLAVR 163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.143 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,965,146
Number of extensions: 158826
Number of successful extensions: 293
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 4
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)