BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0400100 Os05g0400100|AK107541
(290 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240 216 1e-56
AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240 207 6e-54
AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316 81 8e-16
>AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240
Length = 239
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 146/241 (60%), Gaps = 6/241 (2%)
Query: 47 HPCLENPPNMTENTGGEAGDVVHGYGGLECYATGSRRSGGRAVILVSDYYGFRAPKLRKI 106
H C ENPP++ +G V G L+ Y GS S AV+LV +G+ P LRK+
Sbjct: 4 HQCTENPPDLDPTSGSGH---VEKLGNLDTYVCGSTHSK-LAVLLVPHVFGYETPNLRKL 59
Query: 107 ADKVAYQLGCYVVVPDLLFGDPYT-DDPARPFEEWIKTHSPVEAAEKTKPLIAALKKDGT 165
ADKVA + G Y VVPD GDPY ++ RPF W+K H + E++KP++ ALK G
Sbjct: 60 ADKVA-EAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGI 118
Query: 166 STVGVGGYCWGGKVAVELSKTEETKAVVISHPALVVVDDMKEVKCPIEILGGELDTISPP 225
+++G G+CWG KVAVEL+K + A V+ HPA V VDD+KEV PI +LG E+D +SPP
Sbjct: 119 TSIGAAGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPP 178
Query: 226 QLIHQLEDALDQNKRVHHLVKIFPDAPHGFACRYNATDPFAVKTAEEARADMVKWFDKYL 285
+L+ Q ED L +V VKIFP HG+ RYN DP V+ A EA DM+ W YL
Sbjct: 179 ELVRQFEDILASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAHKDMLAWLIDYL 238
Query: 286 E 286
+
Sbjct: 239 K 239
>AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240
Length = 239
Score = 207 bits (526), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 141/239 (58%), Gaps = 6/239 (2%)
Query: 49 CLENPPNMTENTGGEAGDVVHGYGGLECYATGSRRSGGRAVILVSDYYGFRAPKLRKIAD 108
C ENPP + +G V GGL+ Y +GS S V+L+SD +GF AP LR +AD
Sbjct: 6 CCENPPTLNPVSGSGH---VEKLGGLDAYVSGSAESK-LCVLLISDIFGFEAPNLRALAD 61
Query: 109 KVAYQLGCYVVVPDLLFGDPYT-DDPARPFEEWIKTHSPVEAAEKTKPLIAALKKDGTST 167
KVA G YVVVPD GDPY + RP WIK H + E TKP++ +K G +
Sbjct: 62 KVAAS-GFYVVVPDYFGGDPYNPSNQDRPIPVWIKDHGCDKGFENTKPVLETIKNKGITA 120
Query: 168 VGVGGYCWGGKVAVELSKTEETKAVVISHPALVVVDDMKEVKCPIEILGGELDTISPPQL 227
+G G CWG KV VELSK E +A V+ HP+ V VDD+K K PI ILG E+D +SPP L
Sbjct: 121 IGAAGMCWGAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQMSPPAL 180
Query: 228 IHQLEDALDQNKRVHHLVKIFPDAPHGFACRYNATDPFAVKTAEEARADMVKWFDKYLE 286
+ Q E+ L V+ VKI P HG+ RYN +P AVK AEEA +M+ WF Y++
Sbjct: 181 LKQFEEILSSKPEVNSYVKIHPKVSHGWTVRYNIDEPEAVKAAEEAHKEMLDWFVTYIK 239
>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
Length = 315
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 17/223 (7%)
Query: 73 GLECYA-TGSRRSGGRAVILVSDYYGFRAPKLRKIADKVAYQLGCYVVVPDLLFGDPYTD 131
G+E Y T + + G ++L+SD +GF+ R A +VA G V+VPDL GDP++
Sbjct: 99 GVEGYLLTAVKNNNGTGLLLLSDVFGFQDSATRDFAYRVACN-GYNVLVPDLFRGDPWSK 157
Query: 132 D-PARPFEEWIKTHSPVEAAEK----TKPLIAALKKDGTS-TVGVGGYCWGGKVAVELSK 185
+ P +EEW + H P + TK ++ G S +GV G+C+GG V++
Sbjct: 158 NRPKSEYEEWRRGHDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVMGFCFGGGRVVDVLA 217
Query: 186 TEET---KAVVISHPALVVVDDMKEVKCPIEILGGELDTISPPQLIHQLEDALDQNKRVH 242
T+E+ V + + +VK P+ + G+ D + + ++++E+ + + +
Sbjct: 218 TDESGYFSTGVSFYGTRIDSAVAGDVKVPVLFIAGDRDPLCEVKGLYEIEEKIGEGSK-- 275
Query: 243 HLVKIFPDAPHGFACRYNATDPFAVKTAEEARADMVKWFDKYL 285
V ++ HGF R P + AEEA A M W +L
Sbjct: 276 --VVVYEGRGHGFVHR--PETPEDDRDAEEAFALMRNWLHHHL 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,740,369
Number of extensions: 308402
Number of successful extensions: 786
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 3
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)