BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0399200 Os05g0399200|AK101507
         (239 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23600.1  | chr3:8473833-8475655 FORWARD LENGTH=240            255   2e-68
AT3G23570.1  | chr3:8458052-8459608 REVERSE LENGTH=240            249   8e-67
AT1G35420.2  | chr1:13026320-13027463 FORWARD LENGTH=316           70   8e-13

>AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240
          Length = 239

 Score =  255 bits (651), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 131/240 (54%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 1   MASSQCWENPPALDPAXXXXXXXXXXXXQXXXXXXXXXXXXXXVLISDAFGFEAPNLRKI 60
           M+  QC ENPP L+P                            +LISD FGFEAPNLR +
Sbjct: 1   MSGPQCCENPPTLNPVSGSGHVEKLGGLDAYVSGSAESKLCV-LLISDIFGFEAPNLRAL 59

Query: 61  ADKVALFGYFVVVPDFLHGDPYQPDNPNNP-GIWLQSHNPKEAFEEAKPVIAALKEKGAS 119
           ADKVA  G++VVVPD+  GDPY P N + P  +W++ H   + FE  KPV+  +K KG +
Sbjct: 60  ADKVAASGFYVVVPDYFGGDPYNPSNQDRPIPVWIKDHGCDKGFENTKPVLETIKNKGIT 119

Query: 120 FIGAAGYCWGAKVVVELGKVHEIQAAVLLHPSLLAVDDIKEVKCPISILGAEIDKTSPPE 179
            IGAAG CWGAKVVVEL K   IQAAVLLHPS + VDDIK  K PI+ILGAEID+ SPP 
Sbjct: 120 AIGAAGMCWGAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQMSPPA 179

Query: 180 LLKQFEQILSPNPEIAHFVKIFPGVEHGWAVRYNHDDAAAVKSAEEALEDMMDWFKKYLK 239
           LLKQFE+ILS  PE+  +VKI P V HGW VRYN D+  AVK+AEEA ++M+DWF  Y+K
Sbjct: 180 LLKQFEEILSSKPEVNSYVKIHPKVSHGWTVRYNIDEPEAVKAAEEAHKEMLDWFVTYIK 239



>AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240
          Length = 239

 Score =  249 bits (636), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 122/240 (50%), Positives = 158/240 (65%), Gaps = 2/240 (0%)

Query: 1   MASSQCWENPPALDPAXXXXXXXXXXXXQXXXXXXXXXXXXXXVLISDAFGFEAPNLRKI 60
           M+  QC ENPP LDP                            +L+   FG+E PNLRK+
Sbjct: 1   MSGHQCTENPPDLDPTSGSGHVEKLGNLDTYVCGSTHSKLAV-LLVPHVFGYETPNLRKL 59

Query: 61  ADKVALFGYFVVVPDFLHGDPYQPDNPNNP-GIWLQSHNPKEAFEEAKPVIAALKEKGAS 119
           ADKVA  G++ VVPDF HGDPY P+N + P  IW++ H  ++ FEE+KP++ ALK KG +
Sbjct: 60  ADKVAEAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGIT 119

Query: 120 FIGAAGYCWGAKVVVELGKVHEIQAAVLLHPSLLAVDDIKEVKCPISILGAEIDKTSPPE 179
            IGAAG+CWGAKV VEL K   + A VLLHP+ + VDDIKEV  PI++LGAEID+ SPPE
Sbjct: 120 SIGAAGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPE 179

Query: 180 LLKQFEQILSPNPEIAHFVKIFPGVEHGWAVRYNHDDAAAVKSAEEALEDMMDWFKKYLK 239
           L++QFE IL+  P++  FVKIFP  +HGW VRYN +D + V++A EA +DM+ W   YLK
Sbjct: 180 LVRQFEDILASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAHKDMLAWLIDYLK 239



>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
          Length = 315

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 19/206 (9%)

Query: 44  VLISDAFGFEAPNLRKIADKVALFGYFVVVPDFLHGDPYQPDNPNNP-GIWLQSHNPKEA 102
           +L+SD FGF+    R  A +VA  GY V+VPD   GDP+  + P +    W + H+P   
Sbjct: 117 LLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFRGDPWSKNRPKSEYEEWRRGHDPNRI 176

Query: 103 FEEAKPVIAALKEKGASF-----IGAAGYCWGAKVVVELGKVHE---IQAAVLLHPSLLA 154
            ++       + E+ A+      +G  G+C+G   VV++    E       V  + + + 
Sbjct: 177 RQDTTTFTKWMVEEFAAAGISKKLGVMGFCFGGGRVVDVLATDESGYFSTGVSFYGTRID 236

Query: 155 VDDIKEVKCPISILGAEIDKTSPPELLKQFEQILSPNPEIAHFVKIFPGVEHGWAVR--Y 212
                +VK P+  +  + D     + L + E+ +    ++     ++ G  HG+  R   
Sbjct: 237 SAVAGDVKVPVLFIAGDRDPLCEVKGLYEIEEKIGEGSKVV----VYEGRGHGFVHRPET 292

Query: 213 NHDDAAAVKSAEEALEDMMDWFKKYL 238
             DD    + AEEA   M +W   +L
Sbjct: 293 PEDD----RDAEEAFALMRNWLHHHL 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,038,218
Number of extensions: 197663
Number of successful extensions: 460
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 3
Length of query: 239
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 143
Effective length of database: 8,474,633
Effective search space: 1211872519
Effective search space used: 1211872519
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)