BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0394900 Os05g0394900|AK058958
         (373 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02880.2  | chr4:1275131-1277913 FORWARD LENGTH=557             65   6e-11
AT1G03290.1  | chr1:807970-810680 FORWARD LENGTH=572               60   2e-09

>AT4G02880.2 | chr4:1275131-1277913 FORWARD LENGTH=557
          Length = 556

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 46/69 (66%)

Query: 30  AEKMLNEQELILDATKERSKMLEQQVRENAKLRELLMDRGQIVDALQGEMLGIFDKISQL 89
           A K   EQE I++   + SK+L+Q+  EN+KLRE LMD G+IVD+LQGE+  I   I  L
Sbjct: 418 ARKAFAEQEAIMERVVQESKLLQQEAEENSKLREFLMDHGRIVDSLQGEISVICQDIRHL 477

Query: 90  QLRVDKQLP 98
           + + D ++P
Sbjct: 478 KEKFDNRVP 486



>AT1G03290.1 | chr1:807970-810680 FORWARD LENGTH=572
          Length = 571

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 52/98 (53%)

Query: 1   MRYTLQNRFXXXXXXXXXXXXXXXXXXXLAEKMLNEQELILDATKERSKMLEQQVRENAK 60
           MR +L+ R                     A K L EQE  ++   + SK+L+Q+  EN+K
Sbjct: 397 MRGSLEIRLAAALELKKTAEKEKKDKEDSALKALAEQEANMEKVVQESKLLQQEAEENSK 456

Query: 61  LRELLMDRGQIVDALQGEMLGIFDKISQLQLRVDKQLP 98
           LR+ LMDRGQIVD LQGE+  I   +  L+ + + ++P
Sbjct: 457 LRDFLMDRGQIVDTLQGEISVICQDVKLLKEKFENRVP 494



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.127    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,475,784
Number of extensions: 175820
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,364,969
Effective search space: 2283636537
Effective search space used: 2283636537
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)