BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0390100 Os05g0390100|AK120123
         (803 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03160.1  | chr1:761321-766053 FORWARD LENGTH=913              685   0.0  

>AT1G03160.1 | chr1:761321-766053 FORWARD LENGTH=913
          Length = 912

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/803 (45%), Positives = 503/803 (62%), Gaps = 25/803 (3%)

Query: 3   AALSLKASVGDRAYLLVAERXXXXXXXXXXXXXXXXXXIPAIVARSMMMKSNSDSIYLPL 62
           AA  LK+ V  RAYLL+AER                  +PAIVAR+ +M SN DS+ LPL
Sbjct: 127 AACLLKSLVKGRAYLLIAERVDIASAVGASGVALSDEGLPAIVARNTLMGSNPDSVLLPL 186

Query: 63  VXXXXXXXXXXXXXXXXEGADFLIIDTGSDDAINVMNGVSGTQHVKIPIFSTLSDSQSEG 122
           V                EGADFLI+ +G +D   V + +   + VKIPI+ T   ++   
Sbjct: 187 VARIVKDVDSALIASSSEGADFLILGSGEEDT-QVADSL--LKSVKIPIYVTCRGNEE-- 241

Query: 123 SYSDNTSRLLQSGASGIVMSLAGIQVLADDIIERDFSKVDTAESVLQANYSSASTLEEAD 182
             +    +LL+SG SG V+SL  ++        RD +   + +     N      + E  
Sbjct: 242 --AKEELQLLKSGVSGFVISLKDLRS------SRDVALRQSLDGAYVVNNHETQNMNELP 293

Query: 183 NVMVLTREKAKVAGFTKLDEKVMQLISIEKPILSEAVAVIRKAAPMMEEVELLVDAASRL 242
                  EK   AGF KL++K   ++ +EK +L E + +I KAAP+MEEV LL+DA SR+
Sbjct: 294 -------EKKNSAGFIKLEDKQKLIVEMEKSVLRETIEIIHKAAPLMEEVSLLIDAVSRI 346

Query: 243 SEPFLLVTVGEFNSGKSTFINALLGRKYLQEGVVPTTNEIMLLSYSDVDSESAERCERHP 302
            EPFL+V VGEFNSGKST INALLG++YL+EGVVPTTNEI  L YSD++SE  +RC+ HP
Sbjct: 347 DEPFLMVIVGEFNSGKSTVINALLGKRYLKEGVVPTTNEITFLCYSDLESEEQQRCQTHP 406

Query: 303 DGQYMCYLSAPVLKEMNLVDTPGTNVILQRQQRLTEEYVPRADLILFVLSSDRPLTDSEV 362
           DGQY+CYL AP+LK++N+VDTPGTNVILQRQQRLTEE+VPRADL++FVLS+DRPLT+SEV
Sbjct: 407 DGQYVCYLPAPILKDINIVDTPGTNVILQRQQRLTEEFVPRADLLVFVLSADRPLTESEV 466

Query: 363 GFLQYVQQWKKKVVFVLNKLDLYRNSNELEEATAFIKENARKLLNTEDVTLFPVSSRSAL 422
            FL+Y QQWKKK VF+LNK D+YR++ ELEEA +F+KEN RKLLNTE+V L+PVS+RSAL
Sbjct: 467 AFLRYTQQWKKKFVFILNKSDIYRDARELEEAISFVKENTRKLLNTENVILYPVSARSAL 526

Query: 423 EAKLLYSKNDGREHHGEALFNDP--RWRNSKFYDLEHYLLSFLDGSTENGKERVRLKLET 480
           EAKL  +   GR+    A   DP   WR   F +LE +L SFLD ST  G ER+RLKLET
Sbjct: 527 EAKLSTASLVGRDDLEIA---DPGSNWRVQSFNELEKFLYSFLDSSTATGMERIRLKLET 583

Query: 481 PIGIADRLLTSCQRLVKLEYEKAIDDLTSIKDLVSGANNYAVKIEADSDSWQRQISSLIA 540
           P+ IA+RLL+S + LV+ +   A +DL S   ++S    YA+K+E +S SW+RQ  SLI 
Sbjct: 584 PMAIAERLLSSVEALVRQDCLAAREDLASADKIISRTKEYALKMEYESISWRRQALSLID 643

Query: 541 RAKGRAISLMESTLQLSNIDLIFTYTLSGGKSTPTKVTSFFQNDILSPSLDDAANLLSEY 600
            A+ + + L+ +TL+LS++DL  +Y   G KS     TS  Q +IL+P+L +A  LL +Y
Sbjct: 644 NARLQVVDLIGTTLRLSSLDLAISYVFKGEKSASVAATSKVQGEILAPALTNAKELLGKY 703

Query: 601 STWLSSTNVREANIYVDCFHERWGALVAQEQRIXXXXXXXXXXXXXXXXKALDGFSASAA 660
           + WL S   RE ++ +  F  +W   V  + ++                K +   SA   
Sbjct: 704 AEWLQSNTAREGSLSLKSFENKWPTYVNSKTQLGIDTYDLLQKTDKVSLKTIQNLSAGTT 763

Query: 661 AKVFEEEIREVAWGTFXXXXXXXXXXXXXXXXXXXXXEDLLALALCSAGGFFAISNFPTR 720
           +K  E++IREV + T                      EDLLAL LCSAGG+ AI+NFP R
Sbjct: 764 SKRLEQDIREVFFVTVGGLGAAGLSASLLTSVLPTTLEDLLALGLCSAGGYVAIANFPYR 823

Query: 721 RKLAVEKIGKAAEKLSSKVDEAIQQDISRSANQLVHFVETVSKPYQDACQQKIDWLQGVQ 780
           R+  + K+ K A+ L+ ++++A+Q+D+S + + LV+FV  V+KPY++  Q ++D L G+Q
Sbjct: 824 RQAIIGKVNKVADALAQQLEDAMQKDLSDATSNLVNFVNIVAKPYREEAQLRLDRLLGIQ 883

Query: 781 GELSTVERKLQTLKVEIQNLHES 803
            ELS +  KLQ L+V+I NLH S
Sbjct: 884 KELSDIRSKLQLLQVDIDNLHVS 906



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,157,834
Number of extensions: 542918
Number of successful extensions: 1887
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1882
Number of HSP's successfully gapped: 1
Length of query: 803
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 696
Effective length of database: 8,173,057
Effective search space: 5688447672
Effective search space used: 5688447672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)