BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0382600 Os05g0382600|AK068231
(149 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38750.1 | chr2:16196582-16198431 REVERSE LENGTH=320 77 5e-15
AT5G12380.1 | chr5:4009223-4010687 FORWARD LENGTH=317 54 3e-08
AT1G35720.1 | chr1:13225304-13226939 FORWARD LENGTH=318 52 1e-07
AT5G10230.1 | chr5:3209738-3211396 REVERSE LENGTH=317 50 4e-07
AT5G65020.1 | chr5:25973915-25975554 FORWARD LENGTH=318 49 9e-07
>AT2G38750.1 | chr2:16196582-16198431 REVERSE LENGTH=320
Length = 319
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 1 LVGLVSAYRYEGPRVSEETXXXXXXXXXXXXXXXXXXXXXXVENDDVVRILTTRSKPHLV 60
LVGLVSAYRYEG +V +++ VE D+VVRILTTRSK HL
Sbjct: 152 LVGLVSAYRYEGNKVKDDSAKSDAKILAEAVASSGEEA---VEKDEVVRILTTRSKLHLQ 208
Query: 61 ETFKHYKEIHGRHIEEDLGHEETLREAALCLATPARYFS 99
+KH+ EI G + + L EA +CL PA YFS
Sbjct: 209 HLYKHFNEIKGSDLLGGVSKSSLLNEALICLLKPALYFS 247
>AT5G12380.1 | chr5:4009223-4010687 FORWARD LENGTH=317
Length = 316
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 1 LVGLVSAYRYEGPRVSEETXXXXXXXXXXXXXXXXXXXXXXVENDDVVRILTTRSKPHLV 60
LV +VSAY+Y+G + E V++++ +R+L+TRS L
Sbjct: 148 LVAMVSAYKYDGEEIDE------MLAQSEAAILHDEILGKAVDHEETIRVLSTRSSMQLS 201
Query: 61 ETFKHYKEIHGRHIEEDLGHEET------LREAALCLATPARYFS 99
F YK+I+G I +DL + T LR A C+ P RY++
Sbjct: 202 AIFNRYKDIYGTSITKDLLNHPTNEYLSALRAAIRCIKNPTRYYA 246
>AT1G35720.1 | chr1:13225304-13226939 FORWARD LENGTH=318
Length = 317
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 1 LVGLVSAYRYEGPRVSEETXXXXXXXXXXXXXXXXXXXXXXVENDDVVRILTTRSKPHLV 60
LV LV++YRYEG V+ ++DV+RIL+TRSK +
Sbjct: 149 LVSLVTSYRYEGDEVN------MTLAKQEAKLVHEKIKDKHYNDEDVIRILSTRSKAQIN 202
Query: 61 ETFKHYKEIHGRHIEEDL--GHEET-----LREAALCLATPARYFSDC 101
TF Y++ HG I + L G ++ LR CL P YF D
Sbjct: 203 ATFNRYQDDHGEEILKSLEEGDDDDKFLALLRSTIQCLTRPELYFVDV 250
>AT5G10230.1 | chr5:3209738-3211396 REVERSE LENGTH=317
Length = 316
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 1 LVGLVSAYRYEGPRVSEETXXXXXXXXXXXXXXXXXXXXXXVENDDVVRILTTRSKPHLV 60
LV LVS +RY+G V+ +DD++RILTTRSK +
Sbjct: 149 LVPLVSTFRYDGDEVN------MTLARSEAKILHEKIKEKAYADDDLIRILTTRSKAQIS 202
Query: 61 ETFKHYKEIHG----RHIEEDLGHE--ETLREAALCLATPARYF 98
T HYK G ++++ED +E + L+ CL P +YF
Sbjct: 203 ATLNHYKNNFGTSMSKYLKEDSENEYIQLLKAVIKCLTYPEKYF 246
>AT5G65020.1 | chr5:25973915-25975554 FORWARD LENGTH=318
Length = 317
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 1 LVGLVSAYRYEGPRVSEETXXXXXXXXXXXXXXXXXXXXXXVENDDVVRILTTRSKPHLV 60
L+ LVS +RYEG V+ +DD +RILTTRSK L
Sbjct: 149 LLPLVSTFRYEGDDVN------MMLARSEAKILHEKVSEKSYSDDDFIRILTTRSKAQLG 202
Query: 61 ETFKHYKEIHGRHIEEDLGHE-------ETLREAALCLATPARYF 98
T HY +G I ++L E + LR CL P ++F
Sbjct: 203 ATLNHYNNEYGNAINKNLKEESDDNDYMKLLRAVITCLTYPEKHF 247
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,492,002
Number of extensions: 79659
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 5
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)