BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0381400 Os05g0381400|AK102039
(173 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04560.1 | chr1:1245070-1245888 FORWARD LENGTH=187 163 4e-41
AT5G46530.1 | chr5:18875576-18876779 FORWARD LENGTH=158 90 7e-19
AT1G29520.1 | chr1:10323735-10324525 FORWARD LENGTH=159 87 6e-18
AT5G18970.1 | chr5:6333714-6334539 REVERSE LENGTH=172 69 1e-12
>AT1G04560.1 | chr1:1245070-1245888 FORWARD LENGTH=187
Length = 186
Score = 163 bits (413), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/144 (56%), Positives = 99/144 (68%)
Query: 4 VGRTMIAPLLVLNLIMYLIVIGFASWNLNHYINGETNHPGVAGNGATFYFLVFAILAGVV 63
VGR + APLL LNL+MYLIV+GFASW LN YING+TNHP GNGAT +FL F+ILA VV
Sbjct: 5 VGRNIAAPLLFLNLVMYLIVLGFASWCLNKYINGQTNHPSFGGNGATPFFLTFSILAAVV 64
Query: 64 GAASKLAGVHHVRXXXXXXXXXXXXXXXXXXXXXXXXFGLACKEIHIGGYRGWRLRVLEA 123
G ASKLAG +H+R GLACK+I+IGG+RGWRL+++EA
Sbjct: 65 GVASKLAGANHIRFWRNDSLAAAGASSIVAWAITALAMGLACKQINIGGWRGWRLKMIEA 124
Query: 124 FVIILAFTQLLYVAMLHGGLFSGN 147
F+IIL FTQLLY+ ++H G S
Sbjct: 125 FIIILTFTQLLYLMLIHAGSLSSK 148
>AT5G46530.1 | chr5:18875576-18876779 FORWARD LENGTH=158
Length = 157
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 12 LLVLNLIMYLIVIGFASWNLNHYIN------GETNHPG-------VAGNGATFYFLVFAI 58
LLVLN MY IV+G +W++N IN + + P GN AT +F++FA+
Sbjct: 13 LLVLNFCMYAIVLGIGAWSMNKAINHGFLIGADYSLPAHFSPIHFPMGNAATGFFIMFAL 72
Query: 59 LAGVVGAASKLAGVHHVRXXXXXXXXXXXXXXXXXXXXXXXXFGLACKEIHIGGYRGWRL 118
+AGV GAAS ++G+ H++ G CKEI + G R RL
Sbjct: 73 IAGVAGAASVISGISHLQSWTTTSLPAAVSAATIAWSLTLLAMGFGCKEIEL-GMRNARL 131
Query: 119 RVLEAFVIILAFTQLLYVAMLHG 141
R +EAF+IIL+ TQLLY+A ++G
Sbjct: 132 RTMEAFLIILSATQLLYIAAIYG 154
>AT1G29520.1 | chr1:10323735-10324525 FORWARD LENGTH=159
Length = 158
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 77/143 (53%), Gaps = 14/143 (9%)
Query: 12 LLVLNLIMYLIVIGFASWNLNHYIN-GETNHPGVA------------GNGATFYFLVFAI 58
LLVLN MY+IV+G W +N I+ G P + GN AT +F++FA+
Sbjct: 13 LLVLNFCMYVIVLGIGGWAMNRAIDHGFEVGPNLELPAHFSPIYFPMGNAATGFFVIFAL 72
Query: 59 LAGVVGAASKLAGVHHVRXXXXXXXXXXXXXXXXXXXXXXXXFGLACKEIHIGGYRGWRL 118
LAGVVGAAS ++G+ H+R G A KEI + G R +L
Sbjct: 73 LAGVVGAASTISGLSHIRSWTVGSLPAAATAATIAWTLTVLAMGFAWKEIELQG-RNAKL 131
Query: 119 RVLEAFVIILAFTQLLYVAMLHG 141
R +EAF+IIL+ TQL+Y+A +HG
Sbjct: 132 RTMEAFLIILSVTQLIYIAAVHG 154
>AT5G18970.1 | chr5:6333714-6334539 REVERSE LENGTH=172
Length = 171
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 12 LLVLNLIMYLIVIGFASWNLNHYINGETNHPGV-------------AGNGATFYFLVFAI 58
LL+LNL +Y ++ ASW +NH I GN AT +F++F +
Sbjct: 13 LLMLNLGLYFVITIIASWAVNHGIERTRESASTLSLPAKIFPIYFPVGNMATGFFVIFTL 72
Query: 59 LAGVVGAASKLAGVHHVRXXXXXXXXXXXXXXXXXXXXXXXXFGLACKEIHIGGYRGWRL 118
+AGVVG A+ L G+ +V GLACKEI+IG L
Sbjct: 73 IAGVVGMATSLTGIINVLQWDSPNLHSAAASSLISWSLTLLAMGLACKEINIGWTEA-NL 131
Query: 119 RVLEAFVIILAFTQLLYVAMLHGGL 143
R LE II++ TQLL +H G+
Sbjct: 132 RTLEVLTIIVSATQLLCTGAIHAGV 156
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.147 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,516,675
Number of extensions: 78101
Number of successful extensions: 232
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 4
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 108 (46.2 bits)