BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0377000 Os05g0377000|Os05g0377000
(148 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65290.1 | chr1:24249088-24250366 REVERSE LENGTH=127 133 4e-32
AT2G44620.1 | chr2:18414320-18415065 FORWARD LENGTH=123 103 2e-23
AT5G47630.1 | chr5:19306397-19306885 FORWARD LENGTH=132 72 8e-14
AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138 54 2e-08
AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137 54 3e-08
AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137 53 5e-08
AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140 51 2e-07
>AT1G65290.1 | chr1:24249088-24250366 REVERSE LENGTH=127
Length = 126
Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 73/84 (86%)
Query: 39 EGSKGSFLDKGEVADRIVSVVKNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVMAFEEEF 98
E +GSFLDK EV DR++SVVKNFQKV+PSKVTP A+FQ DLGLDSLD+VE+VMA EEEF
Sbjct: 38 EEVRGSFLDKSEVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEF 97
Query: 99 GFEIPDNEAEKIDSIKTAVDFMMS 122
GFEIPDNEA+KI SI AVDF+ S
Sbjct: 98 GFEIPDNEADKIQSIDLAVDFIAS 121
>AT2G44620.1 | chr2:18414320-18415065 FORWARD LENGTH=123
Length = 122
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 60/81 (74%)
Query: 40 GSKGSFLDKGEVADRIVSVVKNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVMAFEEEFG 99
S L + V DR++ VVK+F KV+PSKVTP HFQ DLGLDSLDTVEIVMA EEEF
Sbjct: 35 SSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFK 94
Query: 100 FEIPDNEAEKIDSIKTAVDFM 120
EIPD EA+KIDS A++++
Sbjct: 95 LEIPDKEADKIDSCSLAIEYV 115
>AT5G47630.1 | chr5:19306397-19306885 FORWARD LENGTH=132
Length = 131
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 50 EVADRIVSVVKNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVMAFEEEFGFEIPDNEAEK 109
++ R++ +VK + K S+VT A FQKDL LDSLD E+VMA EEEF EIPD +A+K
Sbjct: 50 QILSRVIELVKKYDKTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKADK 109
Query: 110 IDSIKTAVDFMMS 122
+ +++S
Sbjct: 110 LTCCGDVATYILS 122
>AT3G05020.1 | chr3:1391863-1392878 REVERSE LENGTH=138
Length = 137
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 48 KGEVADRIVSVVKNFQKVEP-SKVTPNAHFQKDLGLDSLDTVEIVMAFEEEFGFEIPDNE 106
K E +++ ++VK + P KV F DLG DSLDTVEIVM EEEF ++ + +
Sbjct: 57 KQETIEKVSAIVKKQLSLTPDKKVVAETKF-ADLGADSLDTVEIVMGLEEEFNIQMAEEK 115
Query: 107 AEKIDSIKTAVDFM 120
A+KI +++ A + +
Sbjct: 116 AQKIATVEQAAELI 129
>AT1G54630.1 | chr1:20401642-20402919 REVERSE LENGTH=137
Length = 136
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 48 KGEVADRIVSVV-KNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVMAFEEEFGFEIPDNE 106
K E D++ +VV K E ++T F LG DSLDTVEIVM EEEFG E+ + +
Sbjct: 55 KPETVDKVCAVVRKQLSLKEADEITAATKFAA-LGADSLDTVEIVMGLEEEFGIEMAEEK 113
Query: 107 AEKIDSIKTAVDFM 120
A+ I +++ A +
Sbjct: 114 AQSIATVEQAAALI 127
>AT1G54580.1 | chr1:20389572-20390770 FORWARD LENGTH=137
Length = 136
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 48 KGEVADRIVSVV-KNFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVMAFEEEFGFEIPDNE 106
K E D++ +VV K E ++T F LG DSLDTVEIVM EEEFG E+ + +
Sbjct: 55 KPETVDKVCAVVRKQLSLKEADEITAATKF-AALGADSLDTVEIVMGLEEEFGIEMAEEK 113
Query: 107 AEKIDSIKTAVDFM 120
A+ I +++ A +
Sbjct: 114 AQSIATVEQAAALI 127
>AT5G27200.1 | chr5:9571185-9571989 FORWARD LENGTH=140
Length = 139
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 48 KGEVADRIVSVVK-NFQKVEPSKVTPNAHFQKDLGLDSLDTVEIVMAFEEEFGFEIPDNE 106
K E +++ +VK + KVT F +LG DSLDTVEIVM EEEFG + +
Sbjct: 58 KQETVEKVSEIVKKQLSLTDDQKVTAGTKF-TELGADSLDTVEIVMGLEEEFGITMAEER 116
Query: 107 AEKIDSIKTAVDFM 120
A++I +++ A + +
Sbjct: 117 AKEIATVQQAAELI 130
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,465,446
Number of extensions: 92038
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 7
Length of query: 148
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 59
Effective length of database: 8,666,545
Effective search space: 511326155
Effective search space used: 511326155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 107 (45.8 bits)