BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0376600 Os05g0376600|AK073218
         (612 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41450.1  | chr2:17278190-17281637 FORWARD LENGTH=613          449   e-126
AT4G03130.1  | chr4:1387781-1390646 REVERSE LENGTH=767             78   1e-14
AT3G21480.1  | chr3:7567730-7571990 FORWARD LENGTH=1042            71   2e-12
AT4G21070.1  | chr4:11248174-11252633 FORWARD LENGTH=942           50   4e-06

>AT2G41450.1 | chr2:17278190-17281637 FORWARD LENGTH=613
          Length = 612

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/615 (41%), Positives = 374/615 (60%), Gaps = 42/615 (6%)

Query: 24  FSIGNCKVEIHGSSLRCQSTEQEEEELTISGPRGAKIVVSVDGAKSSSVGDGFDFILLSP 83
           +SIG+ +V + G +  C+S  +    + I  PR  ++ +S      S       F+LL+P
Sbjct: 14  YSIGDYEVAVDGKNFTCESGPKS---IQIKFPRNYRVKISEKDKIVSDYPKEDMFLLLNP 70

Query: 84  SDVNERNKALLQEVLLLYKQELPTMDYAANTGRKSGFLEKCVTNGKYKTLVLSSTAG--Y 141
            D ++  K+ LQEVL LY +ELP M YA+NTG++S FLE+CV+ GKY +LVL ST G   
Sbjct: 71  RDEDDFTKSHLQEVLKLYSKELPDMRYASNTGKQSAFLERCVSKGKYCSLVLKSTLGGDS 130

Query: 142 EEVTAALSYQLVPADTQYAEIPLAVVRPPYQRVGIGQLLYKELSQRLRNVGVTTIFCWAD 201
           +E+ AA++YQ+VPADTQYAEIPLA V   +Q+ G G+L+Y+EL +RL +VG+ TI+CWAD
Sbjct: 131 DEILAAITYQIVPADTQYAEIPLAAVTYTHQKKGFGKLVYEELMKRLHSVGIRTIYCWAD 190

Query: 202 NVSEGFWLKQGFESVGEVDTKGKICRIPVRADIKRALCFPGGSMLMVSHL-KDLPAPQKS 260
             SEGFWLKQGF  + EVD KGK   + ++++I++ALCFPGGS LM+SHL K+  +  + 
Sbjct: 191 KESEGFWLKQGFIKLAEVDHKGKAKGLHIKSNIRKALCFPGGSTLMLSHLNKEFISNLE- 249

Query: 261 LLSSQQTYQFHTFAPDSISPSDTGTSTPSCEKL---LPQTVACHKVS-------KTAAVE 310
            +SS   YQ    +P S   + TG  T    KL     ++V    +S            E
Sbjct: 250 -ISSSWKYQCEG-SPLSARNNSTGPVTGDSVKLRESFGESVYLDCISGIRSPMDSITGKE 307

Query: 311 KNEDFHGTGGCSFSDQQEN----KRTHETSSSSLKSKRVRCSQHSDHHQDMNQNEICGKP 366
            N         + S+ + +    KR+ E S SSL+SKR+R + +       N +EI    
Sbjct: 308 NNNVISDQATTADSETKCSTPGLKRSWEASLSSLQSKRIRANNN-------NNSEIAKTD 360

Query: 367 LSISNTPIHE--NSVHLMPNELSNPSMVG-------HVKSKISGDAKANISSNGSPSVML 417
           L+ S+    +  NS  +   + S P++          + + I  +A+ N        ++L
Sbjct: 361 LAQSSAKQSKDGNSSQVDITKDSLPTICKRNDVEQCRMATGIDMEARPN---GQHYRILL 417

Query: 418 MNIADETKKTQLIEVVEMLGGVVTCEGNSCTHVITGKVRMTMNFCIALCSGAWIVSPKWL 477
           M+I DE K+  L EV+  LGG VT +G + TH++TGKVR T+N C ALCSGAWIVSP WL
Sbjct: 418 MDICDENKRAWLTEVIRKLGGTVTLDGTTSTHIVTGKVRKTLNLCTALCSGAWIVSPSWL 477

Query: 478 KESFKKGKFVGEAEYVFQDDEFKVKYKSELRDAVVRAKERPCSLFSGYTFCLTKNIQPSV 537
           KES ++G+F  EA ++  D+++++KY ++L+  V+RAK RP SL  GY  C+  NI+  +
Sbjct: 478 KESVREGRFANEASHILHDEDYQLKYDTDLKSTVLRAKARPNSLLKGYDICVGPNIELPI 537

Query: 538 NVLSRIIKSSGGKLINKLDDITQPLKTIFLACEEDMELALDAAKRGIKTFSGEWFLSCVM 597
              S IIKS+GG +I+ ++ + +  K I++ CEED   AL AAK+GI TFS EWF++CVM
Sbjct: 538 KTSSAIIKSAGGNVISGVNKVKEASKAIYIGCEEDTVGALFAAKKGIWTFSSEWFMNCVM 597

Query: 598 TQELDLEAPQFTESL 612
            Q+LDL+ PQF ESL
Sbjct: 598 KQQLDLQVPQFVESL 612



>AT4G03130.1 | chr4:1387781-1390646 REVERSE LENGTH=767
          Length = 766

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 419 NIADETKKTQLIEVVEMLGGVVTCEGNSCTHVITGKVRMTMNFCIALCSGAWIVSPKWLK 478
           N+ DET K Q  +++  LG          TH I  +   T N   A+  G ++V+P WL+
Sbjct: 568 NLDDETVKQQK-KIMVRLGISPASSSADSTHFIADRFARTRNMLEAIALGKFVVTPIWLE 626

Query: 479 ESFKKGKFVGEAEYVFQDDEFKVKYKSELRDAVVRAKERPCSLFSGYTFCLTKNIQPSVN 538
              +    + E  Y+ +D + K K    L  ++ RAK+ P  L  G+  C+T +I+PS  
Sbjct: 627 SCAQTRCLIDEKSYILRDIK-KEKDGFCLLTSLARAKQHP--LLKGFKVCITPSIKPSRG 683

Query: 539 VLSRIIKSSGGKLIN-----KLDDITQPLKTIFLACEEDMELALDAAKRGIKTFSGEWFL 593
           +++ ++K + G+++        +D   P   + L+C+ED +  L    +G   F+ E  L
Sbjct: 684 MITDLVKMTQGQVVEASEIIAAEDRNFPEDVLILSCKEDRDFCLPFVNQGAVIFTSELLL 743

Query: 594 SCVMTQELD 602
           + ++ Q+L+
Sbjct: 744 NGIVIQKLE 752



>AT3G21480.1 | chr3:7567730-7571990 FORWARD LENGTH=1042
          Length = 1041

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 7/163 (4%)

Query: 447  CTHVITGKVRMTMNFCIALCSGAWIVSPKWLKESFKKGKFVGEAEYVFQDDEFKVKYKSE 506
             TH I      T N   A+ SG  +V+ +WL+   +   +V E  Y+ +D + + ++   
Sbjct: 851  ATHFIADNFTRTRNMLEAIASGKPVVTTQWLESIDQVNIYVDEDMYILRDSKKEKEFCFN 910

Query: 507  LRDAVVRAKERPCSLFSGYTFCLTKNIQPSVNVLSRIIKSSGGKLINKL-----DDITQP 561
            +  ++ RA++ P  L  G    +T N +P++N ++ ++K+  G  + +L      +   P
Sbjct: 911  MGVSLARARQFP--LLQGRRVFITPNTKPALNTITTLVKAVHGLPVERLGRSSLSEDKVP 968

Query: 562  LKTIFLACEEDMELALDAAKRGIKTFSGEWFLSCVMTQELDLE 604
               + L+CEED  + +   +RG + +S E  L+ ++TQ L+ E
Sbjct: 969  ENLLVLSCEEDRAICIPFLERGAEVYSSELLLNGIVTQRLEYE 1011



>AT4G21070.1 | chr4:11248174-11252633 FORWARD LENGTH=942
          Length = 941

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 9/137 (6%)

Query: 425 KKTQLIEVVEMLGGVVTCEGNS-CTHVI-----TGKVRMTMNFCIALCSGAWIVSPKWLK 478
           +KT + E  E+ G  ++   +S  THVI      G  + T+ F +A+  G WI++  W+K
Sbjct: 744 EKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIK 803

Query: 479 ESFKKGKFVGEAEYVFQDDEFKVKYKSELRDAVVRAKERPCSLFSGYTFCLTKNIQPSVN 538
              K  K+V E  Y    D   ++    L     RA ++   LF+G  F +  + + +  
Sbjct: 804 ACMKNTKYVSEEPYEITMDVHGIREGPYL--GRQRALKKKPKLFTGLKFYIMGDFELAYK 861

Query: 539 -VLSRIIKSSGGKLINK 554
             L  +I ++GG ++ +
Sbjct: 862 GYLQDLIVAAGGTILRR 878



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,441,971
Number of extensions: 575674
Number of successful extensions: 1635
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1630
Number of HSP's successfully gapped: 4
Length of query: 612
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 508
Effective length of database: 8,255,305
Effective search space: 4193694940
Effective search space used: 4193694940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)