BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0373000 Os05g0373000|AK102012
(477 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387 152 3e-37
AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240 146 2e-35
AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257 139 5e-33
AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240 134 9e-32
AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221 127 1e-29
AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638 120 1e-27
AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150 120 1e-27
>AT1G08820.1 | chr1:2821810-2824412 REVERSE LENGTH=387
Length = 386
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 91/121 (75%)
Query: 8 LVEIHPGEIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGVILPRATC 67
L++I P ++F ++KK++SC V L N + YVAFKVKTTSPK+YCVRPNVGV+ P++TC
Sbjct: 5 LLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64
Query: 68 VFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEENKLRVVL 127
FTVIMQA PPD+ +DKFL+Q+T V T DEDI + FSK G++IEENKLRV L
Sbjct: 65 EFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTL 124
Query: 128 V 128
V
Sbjct: 125 V 125
>AT4G00170.1 | chr4:70732-72085 REVERSE LENGTH=240
Length = 239
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 91/124 (73%), Gaps = 1/124 (0%)
Query: 8 LVEIHPGEIRFEFEVKKKSSCYVCLVNKSE-EYVAFKVKTTSPKRYCVRPNVGVILPRAT 66
LV IHP E++F FE+KK+SSC + L NK+ + VAFKVKTT+P++YCVRPN GV+LP +
Sbjct: 6 LVNIHPTELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDS 65
Query: 67 CVFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEENKLRVV 126
C TV MQAQ AP D+Q +DKFLVQT VV GT +++ F+KE GR IE+ KLRVV
Sbjct: 66 CNVTVTMQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVV 125
Query: 127 LVSA 130
+ A
Sbjct: 126 YIPA 129
>AT3G60600.1 | chr3:22400537-22402408 FORWARD LENGTH=257
Length = 256
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 89/129 (68%)
Query: 1 MGSVDFGLVEIHPGEIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGV 60
+G + L+ + P +++F FE+KK+ SC + L NK++ VAFKVKTT+PK+YCVRPN GV
Sbjct: 15 IGMSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGV 74
Query: 61 ILPRATCVFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEE 120
+LPR+TC V MQAQ AP D+Q +DKFL+Q + G +++ P FSKE G +EE
Sbjct: 75 VLPRSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEE 134
Query: 121 NKLRVVLVS 129
KLRV V+
Sbjct: 135 TKLRVTYVA 143
>AT2G45140.1 | chr2:18611029-18612971 FORWARD LENGTH=240
Length = 239
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 85/122 (69%)
Query: 8 LVEIHPGEIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGVILPRATC 67
L+ I P +++F FE+KK+ SC + L NK++ YVAFKVKTT+PK+YCVRPN GV+ PR++
Sbjct: 5 LLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSSS 64
Query: 68 VFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEENKLRVVL 127
V MQAQ AP DLQ +DKFL+Q V G +D+ FSKE G +EE KLRVV
Sbjct: 65 EVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVY 124
Query: 128 VS 129
V+
Sbjct: 125 VA 126
>AT5G47180.1 | chr5:19161384-19163265 REVERSE LENGTH=221
Length = 220
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 87/122 (71%)
Query: 8 LVEIHPGEIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGVILPRATC 67
L+ I P E++F FE++K+S C + + NK+E YVAFKVKTTSPK+Y VRPN GVI P +C
Sbjct: 9 LISIQPDELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSC 68
Query: 68 VFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEENKLRVVL 127
+ V +QAQ PPD+Q +DKFL+Q+T+VP T +++ F+K+ G+ + E KL+V
Sbjct: 69 IIRVTLQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSY 128
Query: 128 VS 129
++
Sbjct: 129 IT 130
>AT1G51270.3 | chr1:19007577-19011225 FORWARD LENGTH=638
Length = 637
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 82/125 (65%)
Query: 8 LVEIHPGEIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGVILPRATC 67
L+ I P +++F E+ KK SC + L NK+E YVAFK KTT+ K+Y VRPNVGV+LPR++C
Sbjct: 176 LLIIDPVDVQFPIELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSSC 235
Query: 68 VFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEENKLRVVL 127
VIMQA AP D+Q RDK L Q VV T +D+ FSKE G EE +L+V+
Sbjct: 236 EVLVIMQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMY 295
Query: 128 VSATQ 132
V+ Q
Sbjct: 296 VTPPQ 300
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 78/118 (66%)
Query: 15 EIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGVILPRATCVFTVIMQ 74
+IRF E+ K+ SC + L NK++ YVAFK +TT PK YCV+P+VGV+LPR++C V+MQ
Sbjct: 13 DIRFPIELNKQGSCSLNLTNKTDNYVAFKAQTTKPKMYCVKPSVGVVLPRSSCEVLVVMQ 72
Query: 75 AQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEENKLRVVLVSATQ 132
A AP D Q +DK L Q VV GT D+++ FSKE G +EE +++ V+ Q
Sbjct: 73 ALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAPPQ 130
>AT2G23830.1 | chr2:10143646-10144511 FORWARD LENGTH=150
Length = 149
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%)
Query: 8 LVEIHPGEIRFEFEVKKKSSCYVCLVNKSEEYVAFKVKTTSPKRYCVRPNVGVILPRATC 67
L+EI P ++F FE+KK+ SC + L NK++ VAFKVKTT+ YCVRPN G+ILP++TC
Sbjct: 6 LLEIEPMYLQFPFELKKQMSCSLYLTNKTDNNVAFKVKTTNRNNYCVRPNYGLILPKSTC 65
Query: 68 VFTVIMQAQMIAPPDLQIRDKFLVQTTVVPFGTADEDIAPAFFSKEVGRYIEENKLRVVL 127
V MQAQ P D+Q +KF++Q+ + G +++ FSKE G +EE KLRV
Sbjct: 66 KVLVTMQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTY 125
Query: 128 VSAT 131
V +T
Sbjct: 126 VCST 129
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,697,229
Number of extensions: 394861
Number of successful extensions: 1294
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1293
Number of HSP's successfully gapped: 8
Length of query: 477
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 375
Effective length of database: 8,310,137
Effective search space: 3116301375
Effective search space used: 3116301375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)