BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0371200 Os05g0371200|AK109403
(307 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23540.1 | chr5:7937772-7939339 FORWARD LENGTH=309 541 e-154
AT1G71230.1 | chr1:26852560-26854255 FORWARD LENGTH=359 124 5e-29
AT1G22920.1 | chr1:8109882-8111895 REVERSE LENGTH=358 122 2e-28
AT1G10600.1 | chr1:3503765-3505190 FORWARD LENGTH=224 57 9e-09
AT1G10840.1 | chr1:3607885-3610299 REVERSE LENGTH=338 53 2e-07
AT1G48790.1 | chr1:18043925-18047427 REVERSE LENGTH=508 51 7e-07
>AT5G23540.1 | chr5:7937772-7939339 FORWARD LENGTH=309
Length = 308
Score = 541 bits (1393), Expect = e-154, Method: Compositional matrix adjust.
Identities = 265/308 (86%), Positives = 272/308 (88%), Gaps = 1/308 (0%)
Query: 1 MERLQRIFGASG-MGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF 59
MERLQRIFGA G +G EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF
Sbjct: 1 MERLQRIFGAGGGLGHASPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF 60
Query: 60 VDDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCW 119
VD+YTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCW
Sbjct: 61 VDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCW 120
Query: 120 LSGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNV 179
LSGVDINTQQSFEALN RAVAVV+DPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSN+
Sbjct: 121 LSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNL 180
Query: 180 GHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLILKRFDTHSKTN 239
GHLNKPSIQALIHGLNRHYYSIAINYR WTDGL L+RFDTHSKTN
Sbjct: 181 GHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTN 240
Query: 240 EQTVQEMLNLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLG 299
EQTVQEML+LA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTLG
Sbjct: 241 EQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLG 300
Query: 300 TMLDTVVF 307
TMLDTVVF
Sbjct: 301 TMLDTVVF 308
>AT1G71230.1 | chr1:26852560-26854255 FORWARD LENGTH=359
Length = 358
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 91/141 (64%), Gaps = 14/141 (9%)
Query: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
++V IS+LALLKM+ H R+G +E+MGLM G+ D T+ V+D FA+P GT V A D
Sbjct: 57 KRVKISALALLKMVVHARSGGTIEIMGLMQGK-TDGDTIIVMDAFALPVEGTETRVNAQD 115
Query: 87 HVF-------QTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAV 139
+ QTN L GR E VVGWYHSHPG+GCWLSG+D++TQ+ + +
Sbjct: 116 DAYEYMVEYSQTNKL-----AGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFL 170
Query: 140 AVVIDPIQSVK-GKVVIDAFR 159
AVVIDP ++V GKV I AFR
Sbjct: 171 AVVIDPTRTVSAGKVEIGAFR 191
>AT1G22920.1 | chr1:8109882-8111895 REVERSE LENGTH=358
Length = 357
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 88/136 (64%), Gaps = 4/136 (2%)
Query: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 86
++V+IS+LALLKM+ H R+G +E+MGLM G+ D T+ V+D FA+P GT V A
Sbjct: 57 KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQS 115
Query: 87 HVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
++ K GR E VVGWYHSHPG+GCWLSG+D++TQ + +AVVID
Sbjct: 116 DAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVID 175
Query: 145 PIQSVK-GKVVIDAFR 159
P ++V GKV I AFR
Sbjct: 176 PTRTVSAGKVEIGAFR 191
>AT1G10600.1 | chr1:3503765-3505190 FORWARD LENGTH=224
Length = 223
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 49 MEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVG 108
+E G L F++ V + Q T S +A++ V ++ Q R VG
Sbjct: 71 LETCG-TLAAFLERGIFYVTTLIIPKQESTSNSCQAMNEVEVFSI-----QNERELYPVG 124
Query: 109 WYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTM 166
W H+HP GC++S VD++T S++ + P A A+V+ P S K + F+L +P M
Sbjct: 125 WIHTHPSQGCFMSSVDLHTHYSYQVMVPEAFAIVVAPTDSSKSYGI---FKLTDPGGM 179
>AT1G10840.1 | chr1:3607885-3610299 REVERSE LENGTH=338
Length = 337
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 29 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVDHV 88
V I LA+LK++KH + P V G +LG V + V + F P +EA
Sbjct: 25 VQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGS-VLEVTNCFPFPVRDDDEEIEADGAN 83
Query: 89 FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPIQS 148
+Q M+ L++ VGWY S G + + I T +++ R V ++ DP ++
Sbjct: 84 YQLEMMRCLREVNVDNNTVGWYQST-VLGSYQTVELIETFMNYQENIKRCVCIIYDPSKA 142
Query: 149 VKGKVVIDAFRL 160
G + + A +L
Sbjct: 143 DLGVLALKALKL 154
>AT1G48790.1 | chr1:18043925-18047427 REVERSE LENGTH=508
Length = 507
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
Query: 49 MEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAV--DHVFQTNMLDMLKQTGRPEMV 106
+E G++ G + + + + Q T S +A + +F+ KQ+ P
Sbjct: 355 LETCGILAGS-LKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQD----KQSLFP--- 406
Query: 107 VGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVIDPIQSVKGKVVIDAFRLINPQTM 166
+GW H+HP C++S +D++T S++ + P AVA+V+ P S + + FRL P M
Sbjct: 407 LGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRNHGI---FRLTTPGGM 463
Query: 167 ML 168
+
Sbjct: 464 TV 465
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,571,363
Number of extensions: 207657
Number of successful extensions: 511
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 6
Length of query: 307
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 209
Effective length of database: 8,419,801
Effective search space: 1759738409
Effective search space used: 1759738409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)