BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0367000 Os05g0367000|AK103509
         (110 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30000.1  | chr2:12804042-12804374 REVERSE LENGTH=111          223   2e-59
AT1G07170.1  | chr1:2200686-2201018 FORWARD LENGTH=111            223   2e-59

>AT2G30000.1 | chr2:12804042-12804374 REVERSE LENGTH=111
          Length = 110

 Score =  223 bits (567), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110



>AT1G07170.1 | chr1:2200686-2201018 FORWARD LENGTH=111
          Length = 110

 Score =  223 bits (567), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/110 (99%), Positives = 110/110 (100%)

Query: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVI 60
           MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVI
Sbjct: 1   MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60

Query: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
           CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct: 61  CGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.144    0.491 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,796,900
Number of extensions: 116963
Number of successful extensions: 466
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)